Improve model card: add pipeline tag, paper and code links
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by nielsr HF Staff - opened
README.md
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license: llama3
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base_model: meta-llama/Llama-3.1-8B-Instruct
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tags:
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---
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# Cuttlefish
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**Cuttlefish** is a unified all-atom multimodal LLM that grounds language reasoning in geometric cues while scaling structural tokens with structural complexity. Built on Llama-3.1-8B-Instruct, it extends the base LLM with a graph encoder and a Scaling-Aware Patching connector for processing proteins, molecules, DNA, and RNA structures.
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## Quick start
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```python
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from huggingface_hub import snapshot_download
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| Cuttlefish-Encoder | [zihaojing/Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder) |
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| SFT instruction data | [zihaojing/Cuttlefish-SFT-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-SFT-Data) |
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| Encoder pretraining data | [zihaojing/Cuttlefish-Encoder-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-Encoder-Data) |
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---
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base_model: meta-llama/Llama-3.1-8B-Instruct
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license: llama3
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pipeline_tag: text-generation
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tags:
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- biology
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- protein
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- molecule
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- dna
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- rna
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- multimodal
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- structure-grounded
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---
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# Cuttlefish
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**Cuttlefish** is a unified all-atom multimodal LLM that grounds language reasoning in geometric cues while scaling structural tokens with structural complexity. Built on Llama-3.1-8B-Instruct, it extends the base LLM with a graph encoder and a Scaling-Aware Patching connector for processing proteins, molecules, DNA, and RNA structures.
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The model was introduced in the paper [Scaling-Aware Adapter for Structure-Grounded LLM Reasoning](https://huggingface.co/papers/2602.02780).
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**Code**: [https://github.com/zihao-jing/Cuttlefish](https://github.com/zihao-jing/Cuttlefish)
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## Quick start
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To use the model, you can download the weights using `huggingface_hub`. Running inference requires the original codebase.
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```python
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from huggingface_hub import snapshot_download
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| Cuttlefish-Encoder | [zihaojing/Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder) |
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| SFT instruction data | [zihaojing/Cuttlefish-SFT-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-SFT-Data) |
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| Encoder pretraining data | [zihaojing/Cuttlefish-Encoder-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-Encoder-Data) |
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## Citation
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```bibtex
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@article{jing2026cuttlefish,
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title = {Cuttlefish: Scaling-Aware Adapter for Structure-Grounded LLM Reasoning},
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author = {Jing, Zihao and Zeng, Qiuhao and Fang, Ruiyi and Li, Yan Yi and Sun, Yan and Wang, Boyu and Hu, Pingzhao},
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booktitle = {Proceedings of the 43rd International Conference on Machine Learning (ICML)},
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year = {2026},
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url = {https://arxiv.org/abs/2602.02780}
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}
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```
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