Improve model card: add pipeline tag, paper and code links

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by nielsr HF Staff - opened
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  1. README.md +27 -8
README.md CHANGED
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  ---
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- license: llama3
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  base_model: meta-llama/Llama-3.1-8B-Instruct
 
 
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  tags:
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- - biology
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- - protein
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- - molecule
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- - dna
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- - rna
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- - multimodal
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- - structure-grounded
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  ---
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  # Cuttlefish
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  **Cuttlefish** is a unified all-atom multimodal LLM that grounds language reasoning in geometric cues while scaling structural tokens with structural complexity. Built on Llama-3.1-8B-Instruct, it extends the base LLM with a graph encoder and a Scaling-Aware Patching connector for processing proteins, molecules, DNA, and RNA structures.
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  ## Quick start
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  ```python
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  from huggingface_hub import snapshot_download
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@@ -55,3 +62,15 @@ The `<STRUCTURE>` placeholder in the user message is replaced by the encoded str
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  | Cuttlefish-Encoder | [zihaojing/Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder) |
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  | SFT instruction data | [zihaojing/Cuttlefish-SFT-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-SFT-Data) |
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  | Encoder pretraining data | [zihaojing/Cuttlefish-Encoder-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-Encoder-Data) |
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
 
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  base_model: meta-llama/Llama-3.1-8B-Instruct
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+ license: llama3
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+ pipeline_tag: text-generation
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  tags:
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+ - biology
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+ - protein
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+ - molecule
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+ - dna
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+ - rna
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+ - multimodal
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+ - structure-grounded
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  ---
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  # Cuttlefish
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  **Cuttlefish** is a unified all-atom multimodal LLM that grounds language reasoning in geometric cues while scaling structural tokens with structural complexity. Built on Llama-3.1-8B-Instruct, it extends the base LLM with a graph encoder and a Scaling-Aware Patching connector for processing proteins, molecules, DNA, and RNA structures.
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+ The model was introduced in the paper [Scaling-Aware Adapter for Structure-Grounded LLM Reasoning](https://huggingface.co/papers/2602.02780).
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+
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+ **Code**: [https://github.com/zihao-jing/Cuttlefish](https://github.com/zihao-jing/Cuttlefish)
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+
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  ## Quick start
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+ To use the model, you can download the weights using `huggingface_hub`. Running inference requires the original codebase.
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+
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  ```python
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  from huggingface_hub import snapshot_download
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  | Cuttlefish-Encoder | [zihaojing/Cuttlefish-Encoder](https://huggingface.co/zihaojing/Cuttlefish-Encoder) |
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  | SFT instruction data | [zihaojing/Cuttlefish-SFT-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-SFT-Data) |
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  | Encoder pretraining data | [zihaojing/Cuttlefish-Encoder-Data](https://huggingface.co/datasets/zihaojing/Cuttlefish-Encoder-Data) |
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+
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+ ## Citation
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+
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+ ```bibtex
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+ @article{jing2026cuttlefish,
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+ title = {Cuttlefish: Scaling-Aware Adapter for Structure-Grounded LLM Reasoning},
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+ author = {Jing, Zihao and Zeng, Qiuhao and Fang, Ruiyi and Li, Yan Yi and Sun, Yan and Wang, Boyu and Hu, Pingzhao},
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+ booktitle = {Proceedings of the 43rd International Conference on Machine Learning (ICML)},
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+ year = {2026},
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+ url = {https://arxiv.org/abs/2602.02780}
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+ }
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+ ```