| --- |
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| dtype: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
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| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
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| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: is_offtarget |
| dtype: bool |
| - name: unique_id |
| dtype: string |
| - name: perturbation_strength |
| dtype: string |
| - name: abs_magnitude |
| dtype: string |
| - name: effect_pvals_adj |
| dtype: float64 |
| - name: perturbation_expressed |
| dtype: bool |
| - name: perturbation_baseline |
| dtype: float64 |
| - name: effect_reliable |
| dtype: bool |
| - name: drop |
| dtype: bool |
| splits: |
| - name: train |
| num_bytes: 419599573 |
| num_examples: 1119552 |
| - name: test |
| num_bytes: 553079116 |
| num_examples: 1472783 |
| download_size: 102437316 |
| dataset_size: 972678689 |
| - config_name: reasoning_norman |
| features: |
| - name: gene_target |
| list: string |
| - name: protein_target |
| list: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: stimulation |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: perturbation_strength |
| dtype: string |
| - name: abs_magnitude |
| dtype: string |
| - name: is_offtarget |
| dtype: bool |
| - name: effect_pvals_adj |
| dtype: float64 |
| - name: perturbation_expressed |
| dtype: 'null' |
| - name: perturbation_baseline |
| dtype: float64 |
| - name: effect_reliable |
| dtype: bool |
| - name: drop |
| dtype: bool |
| splits: |
| - name: train |
| num_bytes: 552957824 |
| num_examples: 1630264 |
| - name: test |
| num_bytes: 9335456 |
| num_examples: 28108 |
| download_size: 41829714 |
| dataset_size: 562293280 |
| - config_name: reasoning_papalexi2021 |
| features: |
| - name: gene_target |
| dtype: string |
| - name: protein_target |
| dtype: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: perturbation_strength |
| dtype: string |
| - name: abs_magnitude |
| dtype: string |
| - name: is_offtarget |
| dtype: bool |
| - name: effect_pvals_adj |
| dtype: float64 |
| - name: perturbation_expressed |
| dtype: bool |
| - name: perturbation_baseline |
| dtype: float64 |
| - name: effect_reliable |
| dtype: bool |
| - name: drop |
| dtype: bool |
| - name: unique_id |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 57027270 |
| num_examples: 148442 |
| - name: test |
| num_bytes: 4907546 |
| num_examples: 12908 |
| download_size: 8058624 |
| dataset_size: 61934816 |
| - config_name: reasoning_tahoe_drug |
| features: |
| - name: drug |
| dtype: string |
| - name: concentration |
| dtype: float64 |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: perturbation_strength |
| dtype: string |
| - name: abs_magnitude |
| dtype: string |
| - name: drug_targets |
| dtype: string |
| - name: moa_broad |
| dtype: string |
| - name: moa_fine |
| dtype: string |
| - name: human_approved |
| dtype: string |
| - name: clinical_trials |
| dtype: string |
| - name: canonical_smiles |
| dtype: string |
| splits: |
| - name: test |
| num_bytes: 501988086 |
| num_examples: 1157511 |
| - name: train |
| num_bytes: 5574660729 |
| num_examples: 12832228 |
| - name: validation |
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| num_examples: 1478198 |
| download_size: 145962685 |
| dataset_size: 6722449422 |
| - config_name: reasoning_xaira_orion |
| features: |
| - name: gene_target |
| dtype: string |
| - name: protein_target |
| dtype: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: pathway_name |
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| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
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| - name: pvals_adj |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: is_offtarget |
| dtype: bool |
| - name: perturbation_strength |
| dtype: string |
| - name: abs_magnitude |
| dtype: string |
| - name: effect_pvals_adj |
| dtype: float64 |
| - name: perturbation_expressed |
| dtype: bool |
| - name: perturbation_baseline |
| dtype: float64 |
| - name: effect_reliable |
| dtype: bool |
| - name: drop |
| dtype: bool |
| - name: unique_id |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 278503685 |
| num_examples: 676647 |
| - name: validation |
| num_bytes: 60347019 |
| num_examples: 146056 |
| - name: test |
| num_bytes: 780441363 |
| num_examples: 1895658 |
| download_size: 118017141 |
| dataset_size: 1119292067 |
| - config_name: reasoning_xaira_pisces |
| features: |
| - name: gene_target |
| dtype: string |
| - name: protein_target |
| dtype: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float32 |
| - name: pvals_adj |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: perturbation_strength |
| dtype: string |
| - name: abs_magnitude |
| dtype: string |
| - name: effect_pvals_adj |
| dtype: float64 |
| - name: perturbation_expressed |
| dtype: bool |
| - name: perturbation_baseline |
| dtype: float64 |
| - name: effect_reliable |
| dtype: bool |
| - name: drop |
| dtype: bool |
| - name: is_offtarget |
| dtype: bool |
| - name: unique_id |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 826329486 |
| num_examples: 1810178 |
| - name: validation |
| num_bytes: 97105930 |
| num_examples: 213130 |
| - name: test |
| num_bytes: 94724016 |
| num_examples: 207423 |
| download_size: 103867915 |
| dataset_size: 1018159432 |
| - config_name: reasoning_xu2026_perturbfate |
| features: |
| - name: gene_target |
| dtype: string |
| - name: protein_target |
| dtype: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: stimulation |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: perturbation_strength |
| dtype: string |
| - name: abs_magnitude |
| dtype: string |
| - name: is_offtarget |
| dtype: bool |
| - name: effect_pvals_adj |
| dtype: float64 |
| - name: perturbation_expressed |
| dtype: bool |
| - name: perturbation_baseline |
| dtype: float64 |
| - name: effect_reliable |
| dtype: bool |
| - name: drop |
| dtype: bool |
| - name: unique_id |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 363468327 |
| num_examples: 850554 |
| - name: test |
| num_bytes: 41634015 |
| num_examples: 96993 |
| download_size: 44668857 |
| dataset_size: 405102342 |
| configs: |
| - config_name: cells |
| data_files: |
| - split: cells |
| path: cells/cells-* |
| - config_name: chebi |
| data_files: |
| - split: chebi |
| path: chebi/chebi-* |
| - config_name: contrastive-emeraldbay-DMSO-baseline |
| data_files: |
| - split: train |
| path: contrastive-emeraldbay-DMSO-baseline/train-* |
| - split: validation |
| path: contrastive-emeraldbay-DMSO-baseline/validation-* |
| - split: test |
| path: contrastive-emeraldbay-DMSO-baseline/test-* |
| - config_name: contrastive-emeraldbay-drug |
| data_files: |
| - split: train |
| path: contrastive-emeraldbay-drug/train-* |
| - split: validation |
| path: contrastive-emeraldbay-drug/validation-* |
| - split: test |
| path: contrastive-emeraldbay-drug/test-* |
| - config_name: contrastive-kaufman |
| data_files: |
| - split: train |
| path: contrastive-kaufman/train-* |
| - split: val |
| path: contrastive-kaufman/val-* |
| - split: test |
| path: contrastive-kaufman/test-* |
| - config_name: contrastive-marson |
| data_files: |
| - split: train |
| path: contrastive-marson/train-* |
| - split: val |
| path: contrastive-marson/val-* |
| - split: test |
| path: contrastive-marson/test-* |
| - config_name: contrastive-perturbqa |
| data_files: |
| - split: train |
| path: contrastive-perturbqa/train-* |
| - split: val |
| path: contrastive-perturbqa/val-* |
| - split: test |
| path: contrastive-perturbqa/test-* |
| - config_name: contrastive-tahoe-DMSO-baseline |
| data_files: |
| - split: train |
| path: contrastive-tahoe-DMSO-baseline/train-* |
| - split: val |
| path: contrastive-tahoe-DMSO-baseline/val-* |
| - split: test |
| path: contrastive-tahoe-DMSO-baseline/test-* |
| - config_name: contrastive-tahoe-drug |
| data_files: |
| - split: train |
| path: contrastive-tahoe-drug/train-* |
| - split: val |
| path: contrastive-tahoe-drug/val-* |
| - split: test |
| path: contrastive-tahoe-drug/test-* |
| - config_name: contrastive-xaira-orion |
| data_files: |
| - split: train |
| path: contrastive-xaira-orion/train-* |
| - split: val |
| path: contrastive-xaira-orion/val-* |
| - split: test |
| path: contrastive-xaira-orion/test-* |
| - config_name: contrastive-xaira-pisces |
| data_files: |
| - split: train |
| path: contrastive-xaira-pisces/train-* |
| - split: val |
| path: contrastive-xaira-pisces/val-* |
| - split: test |
| path: contrastive-xaira-pisces/test-* |
| - config_name: genes |
| data_files: |
| - split: genes |
| path: genes/genes-* |
| - config_name: pathway_id_mapping |
| data_files: |
| - split: pathway_id_mapping |
| path: pathway_id_mapping/pathway_id_mapping-* |
| - config_name: pathway_interactions |
| data_files: |
| - split: train |
| path: pathway_interactions/train-* |
| - config_name: pathways |
| data_files: |
| - split: pathways |
| path: pathways/pathways-* |
| - config_name: reasoning-tahoe-pathway-classification |
| data_files: |
| - split: train |
| path: reasoning-tahoe-pathway-classification/train-* |
| - split: val |
| path: reasoning-tahoe-pathway-classification/val-* |
| - split: test |
| path: reasoning-tahoe-pathway-classification/test-* |
| - config_name: reasoning_emeraldbay_drug |
| data_files: |
| - split: train |
| path: reasoning_emeraldbay_drug/train-* |
| - split: validation |
| path: reasoning_emeraldbay_drug/validation-* |
| - split: test |
| path: reasoning_emeraldbay_drug/test-* |
| - config_name: reasoning_kaufman |
| data_files: |
| - split: train |
| path: reasoning_kaufman/train-* |
| - split: test |
| path: reasoning_kaufman/test-* |
| - config_name: reasoning_marson |
| data_files: |
| - split: test |
| path: reasoning_marson/test-* |
| - split: train |
| path: reasoning_marson/train-* |
| - config_name: reasoning_nadig_replogle_new |
| data_files: |
| - split: train |
| path: reasoning_nadig_replogle_new/train-* |
| - split: test |
| path: reasoning_nadig_replogle_new/test-* |
| - config_name: reasoning_norman |
| data_files: |
| - split: train |
| path: reasoning_norman/train-* |
| - split: test |
| path: reasoning_norman/test-* |
| - config_name: reasoning_papalexi2021 |
| data_files: |
| - split: train |
| path: reasoning_papalexi2021/train-* |
| - split: test |
| path: reasoning_papalexi2021/test-* |
| - config_name: reasoning_tahoe_drug |
| data_files: |
| - split: test |
| path: reasoning_tahoe_drug/test-* |
| - split: train |
| path: reasoning_tahoe_drug/train-* |
| - split: validation |
| path: reasoning_tahoe_drug/validation-* |
| - config_name: reasoning_xaira_orion |
| data_files: |
| - split: train |
| path: reasoning_xaira_orion/train-* |
| - split: validation |
| path: reasoning_xaira_orion/validation-* |
| - split: test |
| path: reasoning_xaira_orion/test-* |
| - config_name: reasoning_xaira_pisces |
| data_files: |
| - split: train |
| path: reasoning_xaira_pisces/train-* |
| - split: validation |
| path: reasoning_xaira_pisces/validation-* |
| - split: test |
| path: reasoning_xaira_pisces/test-* |
| - config_name: reasoning_xu2026_perturbfate |
| data_files: |
| - split: train |
| path: reasoning_xu2026_perturbfate/train-* |
| - split: test |
| path: reasoning_xu2026_perturbfate/test-* |
| --- |
| |
