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- name: protein_target
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configs:
- config_name: cells
data_files:
- split: cells
path: cells/cells-*
- config_name: chebi
data_files:
- split: chebi
path: chebi/chebi-*
- config_name: contrastive-emeraldbay-DMSO-baseline
data_files:
- split: train
path: contrastive-emeraldbay-DMSO-baseline/train-*
- split: validation
path: contrastive-emeraldbay-DMSO-baseline/validation-*
- split: test
path: contrastive-emeraldbay-DMSO-baseline/test-*
- config_name: contrastive-emeraldbay-drug
data_files:
- split: train
path: contrastive-emeraldbay-drug/train-*
- split: validation
path: contrastive-emeraldbay-drug/validation-*
- split: test
path: contrastive-emeraldbay-drug/test-*
- config_name: contrastive-kaufman
data_files:
- split: train
path: contrastive-kaufman/train-*
- split: val
path: contrastive-kaufman/val-*
- split: test
path: contrastive-kaufman/test-*
- config_name: contrastive-marson
data_files:
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path: contrastive-marson/train-*
- split: val
path: contrastive-marson/val-*
- split: test
path: contrastive-marson/test-*
- config_name: contrastive-perturbqa
data_files:
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path: contrastive-perturbqa/train-*
- split: val
path: contrastive-perturbqa/val-*
- split: test
path: contrastive-perturbqa/test-*
- config_name: contrastive-tahoe-DMSO-baseline
data_files:
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path: contrastive-tahoe-DMSO-baseline/train-*
- split: val
path: contrastive-tahoe-DMSO-baseline/val-*
- split: test
path: contrastive-tahoe-DMSO-baseline/test-*
- config_name: contrastive-tahoe-drug
data_files:
- split: train
path: contrastive-tahoe-drug/train-*
- split: val
path: contrastive-tahoe-drug/val-*
- split: test
path: contrastive-tahoe-drug/test-*
- config_name: contrastive-xaira-orion
data_files:
- split: train
path: contrastive-xaira-orion/train-*
- split: val
path: contrastive-xaira-orion/val-*
- split: test
path: contrastive-xaira-orion/test-*
- config_name: contrastive-xaira-pisces
data_files:
- split: train
path: contrastive-xaira-pisces/train-*
- split: val
path: contrastive-xaira-pisces/val-*
- split: test
path: contrastive-xaira-pisces/test-*
- config_name: genes
data_files:
- split: genes
path: genes/genes-*
- config_name: pathway_id_mapping
data_files:
- split: pathway_id_mapping
path: pathway_id_mapping/pathway_id_mapping-*
- config_name: pathway_interactions
data_files:
- split: train
path: pathway_interactions/train-*
- config_name: pathways
data_files:
- split: pathways
path: pathways/pathways-*
- config_name: reasoning-tahoe-pathway-classification
data_files:
- split: train
path: reasoning-tahoe-pathway-classification/train-*
- split: val
path: reasoning-tahoe-pathway-classification/val-*
- split: test
path: reasoning-tahoe-pathway-classification/test-*
- config_name: reasoning_emeraldbay_drug
data_files:
- split: train
path: reasoning_emeraldbay_drug/train-*
- split: validation
path: reasoning_emeraldbay_drug/validation-*
- split: test
path: reasoning_emeraldbay_drug/test-*
- config_name: reasoning_kaufman
data_files:
- split: train
path: reasoning_kaufman/train-*
- split: test
path: reasoning_kaufman/test-*
- config_name: reasoning_marson
data_files:
- split: test
path: reasoning_marson/test-*
- split: train
path: reasoning_marson/train-*
- config_name: reasoning_nadig_replogle_new
data_files:
- split: train
path: reasoning_nadig_replogle_new/train-*
- split: test
path: reasoning_nadig_replogle_new/test-*
- config_name: reasoning_norman
data_files:
- split: train
path: reasoning_norman/train-*
- split: test
path: reasoning_norman/test-*
- config_name: reasoning_papalexi2021
data_files:
- split: train
path: reasoning_papalexi2021/train-*
- split: test
path: reasoning_papalexi2021/test-*
- config_name: reasoning_tahoe_drug
data_files:
- split: test
path: reasoning_tahoe_drug/test-*
- split: train
path: reasoning_tahoe_drug/train-*
- split: validation
path: reasoning_tahoe_drug/validation-*
- config_name: reasoning_xaira_orion
data_files:
- split: train
path: reasoning_xaira_orion/train-*
- split: validation
path: reasoning_xaira_orion/validation-*
- split: test
path: reasoning_xaira_orion/test-*
- config_name: reasoning_xaira_pisces
data_files:
- split: train
path: reasoning_xaira_pisces/train-*
- split: validation
path: reasoning_xaira_pisces/validation-*
- split: test
path: reasoning_xaira_pisces/test-*
- config_name: reasoning_xu2026_perturbfate
data_files:
- split: train
path: reasoning_xu2026_perturbfate/train-*
- split: test
path: reasoning_xu2026_perturbfate/test-*