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copd-model-e

Tabular Classification

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copd-model-e / training /src /processing /README.md

IamGrooooot's picture

Model E: Unsupervised PCA + clustering risk stratification

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Processing

This folder contains scripts for processing raw EHR data, along with the mappings required to carry out the initial processing steps.

Before running any scripts, first create a directory called 'Model_E_Extracts' within the 'S:/data' directory.

NB: The below processing scripts can be run in any order.

Admissions

process_admissions.py - SMR01 COPD/Resp admissions per patient per year
process_comorbidities.py - SMR01 comorbidities per patient per year

Demographics

process_demographics.py - DOB, sex, marital status and SIMD data

Labs

process_labs.py - lab test values per patient per year, taking the median lab test value from the 2 years prior

Prescribing

process_prescribing.py - prescriptions per patient per year