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khyeom
/
SVSTR-Score

Scikit-learn
Joblib
genomics
structural-variants
short-tandem-repeats
random-forest
variant-calling
Model card Files Files and versions
xet
Community

Instructions to use khyeom/SVSTR-Score with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Scikit-learn

    How to use khyeom/SVSTR-Score with Scikit-learn:

    from huggingface_hub import hf_hub_download
    import joblib
    model = joblib.load(
    	hf_hub_download("khyeom/SVSTR-Score", "sklearn_model.joblib")
    )
    # only load pickle files from sources you trust
    # read more about it here https://skops.readthedocs.io/en/stable/persistence.html
  • Notebooks
  • Google Colab
  • Kaggle
SVSTR-Score / example
4.4 kB
Ctrl+K
Ctrl+K
  • 1 contributor
History: 2 commits
khyeom's picture
khyeom
Fix tier override to apply full config rules (SV 5-rule->LOW, STR 6-rule->WARNING); document HPRC 194-genome multi-sample validation
dfbe7f7 verified 8 days ago
  • str_features.tsv
    1.1 kB
    SVSTR-Score v13 models, locus lookup, inference, model card, real cohort examples 11 days ago
  • str_scored.tsv
    1.27 kB
    Fix tier override to apply full config rules (SV 5-rule->LOW, STR 6-rule->WARNING); document HPRC 194-genome multi-sample validation 8 days ago
  • sv_features.tsv
    975 Bytes
    SVSTR-Score v13 models, locus lookup, inference, model card, real cohort examples 11 days ago
  • sv_scored.tsv
    1.05 kB
    Fix tier override to apply full config rules (SV 5-rule->LOW, STR 6-rule->WARNING); document HPRC 194-genome multi-sample validation 8 days ago