SVSTR-Score / example /str_features.tsv
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SVSTR-Score v13 models, locus lookup, inference, model card, real cohort examples
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chrom pos repcn_a1 repcn_a2 ru_length ref_count delta_from_ref_a1 delta_from_ref_a2 ci_width_a1 ci_width_a2 adsp_a1 adsp_a2 adfl_a1 adfl_a2 adir_a1 adir_a2 total_support_a1 total_support_a2 spanning_frac_a1 spanning_frac_a2 locus_coverage allele_balance support_type_a1 support_type_a2 is_low_depth
chr12 10728964 8.0 8.0 2 19 -11.0 -11.0 7.0 146.0 3.0 3.0 2.0 2.0 0.0 0.0 5.0 5.0 0.6 0.6 23.5197 1.0 2.0 2.0 1
chr13 70022282 11.0 18.0 2 11 0.0 7.0 0.0 23.0 34.0 1.0 5.0 9.0 0.0 0.0 39.0 10.0 0.8717948717948718 0.1 40.7512 0.2564102564102564 2.0 2.0 0
chr4 98868919 6.0 6.0 3 6 0.0 0.0 0.0 0.0 27.0 27.0 9.0 9.0 0.0 0.0 36.0 36.0 0.75 0.75 37.1579 1.0 2.0 2.0 0
chr6 88530656 6.0 5.0 4 6 0.0 -1.0 0.0 0.0 13.0 8.0 8.0 4.0 0.0 0.0 21.0 12.0 0.6190476190476191 0.6666666666666666 37.5663 0.5714285714285714 2.0 2.0 0
chr8 37146469 14.0 18.0 2 14 0.0 4.0 0.0 0.0 15.0 15.0 14.0 18.0 0.0 0.0 29.0 33.0 0.5172413793103449 0.4545454545454545 43.7729 0.8787878787878788 2.0 2.0 0
chr8 50668495 9.0 15.0 3 14 -5.0 1.0 0.0 0.0 8.0 6.0 16.0 18.0 0.0 0.0 24.0 24.0 0.3333333333333333 0.25 37.7296 1.0 2.0 2.0 0