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History: 15 commits

nickrb

Add monomer protein-motif weights (denoiser/decoder/encoder)

35257aa verified 16 days ago

v2
Upload v2/encoder.skeleton.pkl with huggingface_hub 4 months ago
.gitattributes

1.83 kB
Add monomer protein-motif weights (denoiser/decoder/encoder) 16 days ago
decoder.eqx

511 MB
xet

Upload folder using huggingface_hub 5 months ago
decoder.skeleton.pkl
Detected Pickle imports (18)
- "jproteina_complexa.nn.layers.Transition",
- "jproteina_complexa.nn.layers.PairBiasAttention",
- "jproteina_complexa.nn.layers.AdaptiveOutputScale",
- "jproteina_complexa.nn.layers.AdaptiveLayerNorm",
- "numpy.dtype",
- "jax.ShapeDtypeStruct",
- "jproteina_complexa.nn.features.DecoderSeqFeatures",
- "jproteina_complexa.nn.layers.MultiHeadBiasedAttentionADALN_MM",
- "jproteina_complexa.nn.transformer.MultiheadAttnAndTransition",
- "jproteina_complexa.nn.layers.LayerNorm",
- "jproteina_complexa.nn.layers.Sequential",
- "jproteina_complexa.nn.features.DecoderPairFeatures",
- "jproteina_complexa.nn.models.DecoderTransformer",
- "jproteina_complexa.nn.layers.Sigmoid",
- "jproteina_complexa.nn.layers.SwiGLU",
- "jproteina_complexa.nn.transformer.TransformerStack",
- "jproteina_complexa.nn.layers.Linear",
- "jproteina_complexa.nn.layers.TransitionADALN"
How to fix it?
4.07 kB
xet

Re-pickle decoder skeleton under JAX 0.10.0 (adds ShapeDtypeStruct.vma) 3 months ago
decoder_motif.eqx

511 MB
xet

Add monomer protein-motif weights (denoiser/decoder/encoder) 16 days ago
decoder_motif.skeleton.pkl
Detected Pickle imports (18)
- "jproteina_complexa.nn.layers.Transition",
- "jproteina_complexa.nn.layers.PairBiasAttention",
- "jproteina_complexa.nn.layers.AdaptiveOutputScale",
- "jproteina_complexa.nn.layers.AdaptiveLayerNorm",
- "numpy.dtype",
- "jax.ShapeDtypeStruct",
- "jproteina_complexa.nn.features.DecoderSeqFeatures",
- "jproteina_complexa.nn.layers.MultiHeadBiasedAttentionADALN_MM",
- "jproteina_complexa.nn.transformer.MultiheadAttnAndTransition",
- "jproteina_complexa.nn.layers.LayerNorm",
- "jproteina_complexa.nn.layers.Sequential",
- "jproteina_complexa.nn.features.DecoderPairFeatures",
- "jproteina_complexa.nn.models.DecoderTransformer",
- "jproteina_complexa.nn.layers.Sigmoid",
- "jproteina_complexa.nn.layers.SwiGLU",
- "jproteina_complexa.nn.transformer.TransformerStack",
- "jproteina_complexa.nn.layers.Linear",
- "jproteina_complexa.nn.layers.TransitionADALN"
How to fix it?
4.07 kB
xet

Add monomer protein-motif weights (denoiser/decoder/encoder) 16 days ago
denoiser.eqx

636 MB
xet

Upload folder using huggingface_hub 5 months ago
denoiser.skeleton.pkl
Detected Pickle imports (23)
- "jproteina_complexa.nn.features.TargetConcatFeatures",
- "jproteina_complexa.nn.layers.Sequential",
- "jproteina_complexa.nn.features.DenoiserSeqFeatures",
- "jproteina_complexa.nn.layers.Identity",
- "jproteina_complexa.nn.layers.Linear",
- "jproteina_complexa.nn.layers.Transition",
- "jproteina_complexa.nn.layers.AdaptiveOutputScale",
- "jproteina_complexa.nn.transformer.MultiheadAttnAndTransition",
- "jproteina_complexa.nn.features.DenoiserPairCondFeatures",
- "jproteina_complexa.nn.models.LocalLatentsTransformer",
- "jproteina_complexa.nn.transformer.TransformerStack",
- "jproteina_complexa.nn.layers.TransitionADALN",
- "jproteina_complexa.nn.features.DenoiserPairFeatures",
- "jproteina_complexa.nn.features.PairReprBuilder",
- "numpy.dtype",
- "jproteina_complexa.nn.features.DenoiserCondFeatures",
- "jproteina_complexa.nn.layers.AdaptiveLayerNorm",
- "jproteina_complexa.nn.layers.LayerNorm",
- "jproteina_complexa.nn.layers.MultiHeadBiasedAttentionADALN_MM",
- "jproteina_complexa.nn.layers.PairBiasAttention",
- "jproteina_complexa.nn.layers.Sigmoid",
- "jax.ShapeDtypeStruct",
- "jproteina_complexa.nn.layers.SwiGLU"
How to fix it?
5.57 kB
xet

Re-pickle denoiser skeleton under JAX 0.10.0 (adds ShapeDtypeStruct.vma) 3 months ago
denoiser_motif.eqx

634 MB
xet

Add monomer protein-motif weights (denoiser/decoder/encoder) 16 days ago
denoiser_motif.skeleton.pkl
Detected Pickle imports (23)
- "jproteina_complexa.nn.layers.LayerNorm",
- "jproteina_complexa.nn.layers.Sigmoid",
- "jproteina_complexa.nn.features.MotifConcatFeatures",
- "jproteina_complexa.nn.layers.PairBiasAttention",
- "jproteina_complexa.nn.layers.Identity",
- "jproteina_complexa.nn.layers.Transition",
- "jproteina_complexa.nn.features.DenoiserPairFeatures",
- "jproteina_complexa.nn.layers.AdaptiveLayerNorm",
- "jproteina_complexa.nn.transformer.TransformerStack",
- "jproteina_complexa.nn.features.DenoiserPairCondFeatures",
- "jproteina_complexa.nn.transformer.MultiheadAttnAndTransition",
- "jproteina_complexa.nn.layers.Linear",
- "jproteina_complexa.nn.features.PairReprBuilder",
- "jproteina_complexa.nn.layers.TransitionADALN",
- "jproteina_complexa.nn.features.DenoiserCondFeatures",
- "jproteina_complexa.nn.layers.SwiGLU",
- "jproteina_complexa.nn.models.LocalLatentsTransformer",
- "jproteina_complexa.nn.features.DenoiserSeqFeatures",
- "jproteina_complexa.nn.layers.MultiHeadBiasedAttentionADALN_MM",
- "jproteina_complexa.nn.layers.Sequential",
- "jproteina_complexa.nn.layers.AdaptiveOutputScale",
- "numpy.dtype",
- "jax.ShapeDtypeStruct"
How to fix it?
5.51 kB
xet

Add monomer protein-motif weights (denoiser/decoder/encoder) 16 days ago
encoder.eqx

512 MB
xet

Upload folder using huggingface_hub 5 months ago
encoder.skeleton.pkl
Detected Pickle imports (19)
- "jproteina_complexa.nn.layers.Identity",
- "jproteina_complexa.nn.layers.Sequential",
- "jproteina_complexa.nn.features.EncoderSeqFeatures",
- "jproteina_complexa.nn.layers.Linear",
- "jproteina_complexa.nn.layers.Transition",
- "jproteina_complexa.nn.layers.AdaptiveOutputScale",
- "jproteina_complexa.nn.transformer.MultiheadAttnAndTransition",
- "jproteina_complexa.nn.transformer.TransformerStack",
- "jproteina_complexa.nn.models.EncoderTransformer",
- "jproteina_complexa.nn.layers.TransitionADALN",
- "jproteina_complexa.nn.layers.AdaptiveLayerNorm",
- "numpy.dtype",
- "jproteina_complexa.nn.layers.MultiHeadBiasedAttentionADALN_MM",
- "jproteina_complexa.nn.layers.LayerNorm",
- "jproteina_complexa.nn.layers.PairBiasAttention",
- "jproteina_complexa.nn.layers.Sigmoid",
- "jax.ShapeDtypeStruct",
- "jproteina_complexa.nn.layers.SwiGLU",
- "jproteina_complexa.nn.features.EncoderPairFeatures"
How to fix it?
3.88 kB
xet

Re-pickle encoder skeleton under JAX 0.10.0 (adds ShapeDtypeStruct.vma) 3 months ago
encoder_motif.eqx

512 MB
xet

Add monomer protein-motif weights (denoiser/decoder/encoder) 16 days ago
encoder_motif.skeleton.pkl
Detected Pickle imports (19)
- "jproteina_complexa.nn.layers.Identity",
- "jproteina_complexa.nn.layers.Sequential",
- "jproteina_complexa.nn.features.EncoderSeqFeatures",
- "jproteina_complexa.nn.layers.Linear",
- "jproteina_complexa.nn.layers.Transition",
- "jproteina_complexa.nn.layers.AdaptiveOutputScale",
- "jproteina_complexa.nn.transformer.MultiheadAttnAndTransition",
- "jproteina_complexa.nn.transformer.TransformerStack",
- "jproteina_complexa.nn.models.EncoderTransformer",
- "jproteina_complexa.nn.layers.TransitionADALN",
- "jproteina_complexa.nn.layers.AdaptiveLayerNorm",
- "numpy.dtype",
- "jproteina_complexa.nn.layers.MultiHeadBiasedAttentionADALN_MM",
- "jproteina_complexa.nn.layers.LayerNorm",
- "jproteina_complexa.nn.layers.PairBiasAttention",
- "jproteina_complexa.nn.layers.Sigmoid",
- "jax.ShapeDtypeStruct",
- "jproteina_complexa.nn.layers.SwiGLU",
- "jproteina_complexa.nn.features.EncoderPairFeatures"
How to fix it?
3.88 kB
xet

Add monomer protein-motif weights (denoiser/decoder/encoder) 16 days ago

Detected Pickle imports (18)

Detected Pickle imports (18)

Detected Pickle imports (23)

Detected Pickle imports (23)

Detected Pickle imports (19)

Detected Pickle imports (19)