Dataset Preview
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 3 new columns ({'value', 'uberon_name', 'cosine_similarity'}) and 1 missing columns ({'run_accession,study_accession,instrument_platform,library_selection,library_strategy,base_count,sequencing_source,biopsy_site,bs_uberon_code,biopsy_type,cell_line,cell_type,organ,organ_uberon_code,disease,do_code,is_cancer,treatment,treatment_time,response,age,sex,ethnicity'}).
This happened while the csv dataset builder was generating data using
hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations/manual_dics/200k_2025_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv (at revision d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45), [/tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/2025_final_completed_metadata_RNAseq.csv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/2025_final_completed_metadata_RNAseq.csv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/800k_completed_metadata.csv.gz (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/800k_completed_metadata.csv.gz), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus_vLLMpreprocess.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus_vLLMpreprocess.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1837, in _prepare_split_single
writer.write_table(table)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2369, in table_cast
return cast_table_to_schema(table, schema)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2297, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
value: string
uberon_name: string
cosine_similarity: double
-- schema metadata --
pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 628
to
{'run_accession,study_accession,instrument_platform,library_selection,library_strategy,base_count,sequencing_source,biopsy_site,bs_uberon_code,biopsy_type,cell_line,cell_type,organ,organ_uberon_code,disease,do_code,is_cancer,treatment,treatment_time,response,age,sex,ethnicity': Value('string')}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1348, in compute_config_parquet_and_info_response
parquet_operations = convert_to_parquet(builder)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
builder.download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 890, in download_and_prepare
self._download_and_prepare(
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 951, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1683, in _prepare_split
for job_id, done, content in self._prepare_split_single(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1839, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 3 new columns ({'value', 'uberon_name', 'cosine_similarity'}) and 1 missing columns ({'run_accession,study_accession,instrument_platform,library_selection,library_strategy,base_count,sequencing_source,biopsy_site,bs_uberon_code,biopsy_type,cell_line,cell_type,organ,organ_uberon_code,disease,do_code,is_cancer,treatment,treatment_time,response,age,sex,ethnicity'}).
This happened while the csv dataset builder was generating data using
hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations/manual_dics/200k_2025_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv (at revision d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45), [/tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/2025_final_completed_metadata_RNAseq.csv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/2025_final_completed_metadata_RNAseq.csv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/800k_completed_metadata.csv.gz (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/800k_completed_metadata.csv.gz), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus_vLLMpreprocess.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_cell_line_values_mapped_to_cellosaurus_vLLMpreprocess.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/200k_2025_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv), /tmp/hf-datasets-cache/medium/datasets/13045824768234-config-parquet-and-info-chumphati-1M_RNAseq_SRA_s-a5f91338/hub/datasets--chumphati--1M_RNAseq_SRA_samples_annotations/snapshots/d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv (origin=hf://datasets/chumphati/1M_RNAseq_SRA_samples_annotations@d99a3132eb65baa4eb66a332c2ec9ee46c4e2b45/manual_dics/800k_2012-2024_goodqual/global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv)]
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
run_accession,study_accession,instrument_platform,library_selection,library_strategy,base_count,sequencing_source,biopsy_site,bs_uberon_code,biopsy_type,cell_line,cell_type,organ,organ_uberon_code,disease,do_code,is_cancer,treatment,treatment_time,response,age,sex,ethnicity string |
|---|
SRR628241,PRJNA182514,ABI_SOLID,inverse rrna,rna-seq,3355487150,single cell,platelets,unknown,blood,primary tissue,platelets,platelets,unknown,healthy,unknown,false,depleted,not applicable,stable,unknown,unknown,unknown |
SRR452343,PRJNA157511,ABI_SOLID,small rna,rna-seq,3603723000,bulk,intestine,UBERON:0000160,primary,primary tissue,unknown,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,61Y,male,asian |
SRR094660,PRJNA136721,ABI_SOLID,small rna,rna-seq,930922965,bulk,unknown,unknown,primary,unknown,human umbelical vein endothelial cells,blood vessel,UBERON:0001981,unknown,unknown,false,normoxia,24 hours,unknown,unknown,unknown,unknown |
SRR413913,PRJNA151813,ABI_SOLID,small rna,rna-seq,1044260350,bulk,fetal kidney,UBERON:0002113,primary,HEK293,hek293 cells,kidney,UBERON:0002113,unknown,unknown,false,transrl-sv40,not applicable,unknown,fetus,female,unknown |
SRR452379,PRJNA157511,ABI_SOLID,small rna,rna-seq,756569380,bulk,stomach,UBERON:0000945,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,32Y,female,asian |
SRR139219,unknown,ABI_SOLID,small rna,rna-seq,312377300,bulk,thymus,UBERON:0002370,primary,unknown,unknown,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR094663,PRJNA136721,ABI_SOLID,small rna,rna-seq,994812630,bulk,unknown,unknown,primary,unknown,human umbelical vein endothelial cells,blood vessel,UBERON:0001981,unknown,unknown,false,hypoxia,24 hours,unknown,unknown,unknown,unknown |
SRR413914,PRJNA151813,ABI_SOLID,small rna,rna-seq,840271100,bulk,fetal kidney,UBERON:0002113,primary,HEK293,hek293 cells,kidney,UBERON:0002113,unknown,unknown,false,transiently transfected plasmids,not applicable,unknown,fetus,female,unknown |
SRR413917,PRJNA151813,ABI_SOLID,small rna,rna-seq,1002694750,bulk,fetal kidney,UBERON:0002113,primary,HEK293,hek293 cells,kidney,UBERON:0002113,unknown,unknown,false,transiently transfected plasmids,not applicable,unknown,fetus,female,unknown |
SRR452376,PRJNA157511,ABI_SOLID,small rna,rna-seq,1370985700,bulk,stomach,UBERON:0000945,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,60Y,female,asian |
SRR568013,PRJNA175123,HELICOS,polya,rna-seq,775479433,bulk,"uterus, cervix",UBERON:0000002,primary,HeLa S3,unknown,unknown,unknown,human papillomavirus-related endocervical adenocarcinoma,unknown,false,cstf64 rnai,not applicable,stable,30y6m,female,african american |
SRR424672,PRJNA153117,ABI_SOLID,other,rna-seq,1256562300,bulk,brain,UBERON:0000955,primary,unknown,mixture of brain liver and muscle rna respectively,brain,UBERON:0000955,unknown,unknown,false,spike-in standards,not applicable,unknown,unknown,unknown,unknown |
ERR173270,PRJEB3293,ABI_SOLID,polya,rna-seq,2265066150,bulk,pancreas,UBERON:0001264,primary,primary tissue,islet cell,brain,UBERON:0000955,brain ischemia,DOID:2316,false,unknown,not applicable,no treatment,31Y,male,unknown |
SRR543504,PRJNA173018,HELICOS,other,rna-seq,1858493937,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell ctc,blood,UBERON:0000178,healthy,unknown,true,epcam,not applicable,unknown,unknown,unknown,unknown |
SRR452380,PRJNA157511,ABI_SOLID,small rna,rna-seq,1304852885,bulk,stomach,UBERON:0000945,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,66Y,female,asian |
SRR139172,unknown,ABI_SOLID,small rna,rna-seq,746202205,bulk,kidney,UBERON:0002113,primary,unknown,kidney,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR543507,PRJNA173018,HELICOS,other,rna-seq,2217846734,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,healthy,unknown,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR452345,PRJNA157511,ABI_SOLID,small rna,rna-seq,3735279900,bulk,stomach,UBERON:0000945,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,69Y,male,asian |
SRR139178,unknown,ABI_SOLID,small rna,rna-seq,651143780,bulk,brain,UBERON:0000955,primary,unknown,liver cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452382,PRJNA157511,ABI_SOLID,small rna,rna-seq,1209172020,bulk,stomach,UBERON:0000945,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,66Y,male,asian |
SRR424674,PRJNA153117,ABI_SOLID,other,rna-seq,1215678550,bulk,brain,UBERON:0000955,primary,unknown,mixture of brain liver and muscle rna respectively,brain,UBERON:0000955,unknown,unknown,false,spike-in standards,not applicable,unknown,unknown,unknown,unknown |
SRR442074,PRJNA153307,ABI_SOLID,other,rna-seq,987642550,bulk,colon,UBERON:0001155,primary,LS174T,epithelial cell of colon,colon,UBERON:0001155,colon adenocarcinoma,DOID:162,true,wnt,72 hours,unknown,58Y,female,caucasian |
SRR139176,unknown,ABI_SOLID,small rna,rna-seq,287340375,bulk,kidney,UBERON:0002113,primary,unknown,kidney,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452383,PRJNA157511,ABI_SOLID,small rna,rna-seq,675559430,bulk,intestine,UBERON:0000160,primary,primary tissue,unknown,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,47Y,male,asian |
SRR442077,PRJNA153307,ABI_SOLID,other,rna-seq,1501924250,bulk,colon,UBERON:0001155,primary,LS174T,epithelial cell of colon,colon,UBERON:0001155,colon adenocarcinoma,DOID:162,true,wnt,72 hours,unknown,58Y,female,caucasian |
SRR452337,PRJNA157511,ABI_SOLID,small rna,rna-seq,4794962150,bulk,intestine,UBERON:0000160,primary,primary tissue,unknown,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,63Y,male,asian |
SRR452384,PRJNA157511,ABI_SOLID,small rna,rna-seq,1261099070,bulk,intestine,UBERON:0000160,primary,primary tissue,unknown,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,61Y,male,asian |
SRR452348,PRJNA157511,ABI_SOLID,small rna,rna-seq,3232056600,bulk,unknown,unknown,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,60Y,female,asian |
SRR452338,PRJNA157511,ABI_SOLID,small rna,rna-seq,3534642950,bulk,intestine,UBERON:0000160,primary,primary tissue,unknown,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,58Y,male,asian |
SRR452387,PRJNA157511,ABI_SOLID,small rna,rna-seq,689857910,bulk,unknown,unknown,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,72Y,male,asian |
SRR543502,PRJNA173018,HELICOS,other,rna-seq,1499371724,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell ctc,blood,UBERON:0000178,healthy,unknown,true,epcam,not applicable,unknown,unknown,unknown,unknown |
SRR452340,PRJNA157511,ABI_SOLID,small rna,rna-seq,4085511600,bulk,unknown,unknown,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,64Y,male,asian |
SRR543510,PRJNA173018,HELICOS,other,rna-seq,3457673004,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
SRR452341,PRJNA157511,ABI_SOLID,small rna,rna-seq,2835505150,bulk,unknown,unknown,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,76Y,male,asian |
SRR387796,unknown,ABI_SOLID,other,rna-seq,1986312150,bulk,unknown,unknown,primary,ADSC_1,white fat progenitor cells,unknown,unknown,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR139177,unknown,ABI_SOLID,small rna,rna-seq,781380740,bulk,brain,UBERON:0000955,primary,unknown,liver cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452344,PRJNA157511,ABI_SOLID,small rna,rna-seq,3169469050,bulk,stomach,UBERON:0000945,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,69Y,male,asian |
SRR452352,PRJNA157511,ABI_SOLID,small rna,rna-seq,4566613350,bulk,intestine,UBERON:0000160,primary,primary tissue,stomach cells,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,73Y,female,asian |
SRR452386,PRJNA157511,ABI_SOLID,small rna,rna-seq,6385228605,bulk,stomach,UBERON:0000945,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,55Y,male,asian |
SRR139179,unknown,ABI_SOLID,small rna,rna-seq,779188970,bulk,brain,UBERON:0000955,primary,unknown,liver cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR543505,PRJNA173018,HELICOS,other,rna-seq,1617402329,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,healthy,unknown,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR543511,PRJNA173018,HELICOS,other,rna-seq,4430023001,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR452351,PRJNA157511,ABI_SOLID,small rna,rna-seq,3440238000,bulk,stomach,UBERON:0000945,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,32Y,female,asian |
SRR139186,unknown,ABI_SOLID,small rna,rna-seq,808470425,bulk,lung,UBERON:0002048,primary,unknown,lung cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR390490,PRJNA30709,ABI_SOLID,polya,rna-seq,808078890,bulk,fetal lung,UBERON:0005597,primary,AG04450,fibroblast of lung,prostate gland,UBERON:0002367,unknown,unknown,false,unknown,not applicable,no treatment,12fw,male,unknown |
SRR452353,PRJNA157511,ABI_SOLID,small rna,rna-seq,3183598750,bulk,stomach,UBERON:0000945,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,66Y,female,asian |
SRR452356,PRJNA157511,ABI_SOLID,small rna,rna-seq,2782867250,bulk,stomach,UBERON:0000945,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,66Y,male,asian |
SRR452354,PRJNA157511,ABI_SOLID,small rna,rna-seq,3689991450,bulk,intestine,UBERON:0000160,primary,primary tissue,unknown,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,66Y,male,asian |
SRR543512,PRJNA173018,HELICOS,other,rna-seq,3641794955,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
SRR543513,PRJNA173018,HELICOS,other,rna-seq,3782459554,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR452355,PRJNA157511,ABI_SOLID,small rna,rna-seq,3183207600,bulk,unknown,unknown,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,64Y,male,asian |
SRR139183,unknown,ABI_SOLID,small rna,rna-seq,722539090,bulk,lung,UBERON:0002048,primary,unknown,lung cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR139188,unknown,ABI_SOLID,small rna,rna-seq,1418136510,bulk,lung,UBERON:0002048,primary,unknown,lung cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452357,PRJNA157511,ABI_SOLID,small rna,rna-seq,4192485350,bulk,unknown,unknown,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,52Y,male,asian |
SRR543506,PRJNA173018,HELICOS,other,rna-seq,1475372682,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell ctc,blood,UBERON:0000178,healthy,unknown,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
SRR543515,PRJNA173018,HELICOS,other,rna-seq,2400925856,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR543525,PRJNA173018,HELICOS,other,rna-seq,3226785829,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR452358,PRJNA157511,ABI_SOLID,small rna,rna-seq,3131985900,bulk,intestine,UBERON:0000160,primary,primary tissue,unknown,intestine,UBERON:0000160,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,47Y,male,asian |
SRR139199,unknown,ABI_SOLID,small rna,rna-seq,464758280,bulk,placenta,UBERON:0001987,primary,unknown,placenta,brain,UBERON:0000955,unknown,unknown,false,placenta,not applicable,unknown,unknown,unknown,unknown |
SRR543508,PRJNA173018,HELICOS,other,rna-seq,1730813392,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell ctc,blood,UBERON:0000178,healthy,unknown,true,epcam,not applicable,unknown,unknown,unknown,unknown |
SRR452378,PRJNA157511,ABI_SOLID,small rna,rna-seq,1536327695,bulk,unknown,unknown,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,52Y,male,asian |
SRR413912,PRJNA151813,ABI_SOLID,small rna,rna-seq,1001399350,bulk,fetal kidney,UBERON:0002113,primary,HEK293,hek293 cells,kidney,UBERON:0002113,unknown,unknown,false,transiently transfected phrl-sv40,not applicable,unknown,fetus,female,unknown |
SRR413919,PRJNA151813,ABI_SOLID,small rna,rna-seq,1036812450,bulk,fetal kidney,UBERON:0002113,primary,HEK293,hek293 cells,kidney,UBERON:0002113,unknown,unknown,false,transiently transfected plasmids,not applicable,unknown,fetus,female,unknown |
SRR442080,PRJNA153307,ABI_SOLID,other,rna-seq,1455115600,bulk,colon,UBERON:0001155,primary,LS174T,epithelial cell of colon,colon,UBERON:0001155,colon adenocarcinoma,DOID:162,true,unknown,not applicable,no treatment,58Y,female,caucasian |
SRR139170,unknown,ABI_SOLID,small rna,rna-seq,378144875,bulk,heart,UBERON:0000948,primary,unknown,heart,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452362,PRJNA157511,ABI_SOLID,small rna,rna-seq,4463826000,bulk,unknown,unknown,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,72Y,male,asian |
SRR139191,unknown,ABI_SOLID,small rna,rna-seq,574186830,bulk,ovary,UBERON:0000992,primary,unknown,ovary,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR442083,PRJNA153307,ABI_SOLID,other,rna-seq,1125558900,bulk,colon,UBERON:0001155,primary,LS174T,epithelial cell of colon,colon,UBERON:0001155,colon adenocarcinoma,DOID:162,true,unknown,not applicable,no treatment,58Y,female,caucasian |
SRR543530,PRJNA173018,HELICOS,other,rna-seq,2773760321,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
SRR139202,unknown,ABI_SOLID,small rna,rna-seq,686999985,bulk,spleen,UBERON:0002106,primary,unknown,blood cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR543531,PRJNA173018,HELICOS,other,rna-seq,2500612350,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR543532,PRJNA173018,HELICOS,other,rna-seq,1026591509,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
SRR139203,unknown,ABI_SOLID,small rna,rna-seq,682901940,bulk,spleen,UBERON:0002106,primary,unknown,blood cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR442086,PRJNA153307,ABI_SOLID,other,rna-seq,1954496150,bulk,colon,UBERON:0001155,primary,LS174T,epithelial cell of colon,colon,UBERON:0001155,colon adenocarcinoma,DOID:162,true,unknown,not applicable,no treatment,58Y,female,caucasian |
SRR442088,PRJNA153307,ABI_SOLID,other,rna-seq,502366700,bulk,colon,UBERON:0001155,primary,LS174T,epithelial cell of colon,colon,UBERON:0001155,colon adenocarcinoma,DOID:162,true,unknown,not applicable,no treatment,58Y,female,caucasian |
SRR139207,unknown,ABI_SOLID,small rna,rna-seq,330195675,bulk,spleen,UBERON:0002106,primary,unknown,blood cells,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
ERR173257,PRJEB3293,ABI_SOLID,polya,rna-seq,3714050450,bulk,pancreas,UBERON:0001264,primary,primary tissue,islet cell,brain,UBERON:0000955,traumatic brain injury,DOID:0081292,false,unknown,not applicable,no treatment,70Y,male,unknown |
SRR543533,PRJNA173018,HELICOS,other,rna-seq,1286148860,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
ERR173264,PRJEB3293,ABI_SOLID,polya,rna-seq,2544934250,bulk,pancreas,UBERON:0001264,primary,primary tissue,islet cell,brain,UBERON:0000955,traumatic brain injury,DOID:0081292,false,unknown,not applicable,no treatment,62Y,male,unknown |
SRR139164,unknown,ABI_SOLID,small rna,rna-seq,729939000,bulk,heart,UBERON:0000948,primary,unknown,heart,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR139173,unknown,ABI_SOLID,small rna,rna-seq,910490245,bulk,kidney,UBERON:0002113,primary,unknown,kidney,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452388,PRJNA157511,ABI_SOLID,small rna,rna-seq,856365860,bulk,unknown,unknown,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,unknown,male,asian |
SRR139165,unknown,ABI_SOLID,small rna,rna-seq,602287490,bulk,heart,UBERON:0000948,primary,unknown,heart,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452364,PRJNA157511,ABI_SOLID,small rna,rna-seq,3693015650,bulk,unknown,unknown,primary,primary tissue,unknown,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,unknown,male,asian |
SRR139174,unknown,ABI_SOLID,small rna,rna-seq,739983230,bulk,kidney,UBERON:0002113,primary,unknown,kidney,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR543509,PRJNA173018,HELICOS,other,rna-seq,2663228671,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,healthy,unknown,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR543514,PRJNA173018,HELICOS,other,rna-seq,2334522288,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
SRR139171,unknown,ABI_SOLID,small rna,rna-seq,929934985,bulk,kidney,UBERON:0002113,primary,unknown,kidney,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR627520,PRJNA182514,ABI_SOLID,inverse rrna,rna-seq,2273854150,single cell,platelets,unknown,blood,primary tissue,platelets,platelets,unknown,healthy,unknown,false,depleted,not applicable,stable,unknown,unknown,unknown |
SRR452365,PRJNA157511,ABI_SOLID,small rna,rna-seq,1932778575,bulk,unknown,unknown,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,83Y,male,asian |
SRR139166,unknown,ABI_SOLID,small rna,rna-seq,742374465,bulk,heart,UBERON:0000948,primary,unknown,heart,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR628222,PRJNA182514,ABI_SOLID,inverse rrna,rna-seq,7379362150,single cell,platelets,unknown,primary,primary tissue,platelets,platelets,unknown,healthy,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR452368,PRJNA157511,ABI_SOLID,small rna,rna-seq,1149476300,bulk,stomach,UBERON:0000945,primary,primary tissue,stomach cells,stomach,UBERON:0000945,stomach cancer,DOID:10534,true,unknown,not applicable,no treatment,70Y,female,asian |
SRR543517,PRJNA173018,HELICOS,other,rna-seq,2586868861,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR139167,unknown,ABI_SOLID,small rna,rna-seq,603391180,bulk,heart,UBERON:0000948,primary,unknown,heart,brain,UBERON:0000955,unknown,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR543519,PRJNA173018,HELICOS,other,rna-seq,2263997610,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,igg,not applicable,unknown,unknown,unknown,unknown |
SRR628234,PRJNA182514,ABI_SOLID,inverse rrna,rna-seq,4926355900,single cell,platelets,unknown,blood,primary tissue,platelets,platelets,unknown,healthy,unknown,false,depleted,not applicable,stable,unknown,unknown,unknown |
SRR543524,PRJNA173018,HELICOS,other,rna-seq,4237950903,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
SRR628235,PRJNA182514,ABI_SOLID,inverse rrna,rna-seq,2083033700,single cell,platelets,unknown,primary,primary tissue,platelets,platelets,unknown,healthy,unknown,false,unknown,not applicable,no treatment,unknown,unknown,unknown |
SRR543526,PRJNA173018,HELICOS,other,rna-seq,3562481738,bulk,blood,UBERON:0000178,metastasis,unknown,circulating tumor cell,blood,UBERON:0000178,pancreatic cancer,DOID:1793,true,epcam ctc-chip,not applicable,unknown,unknown,unknown,unknown |
End of preview.
1M RNAseq SRA samples annotations
- 800k_completed_metadata.csv: main metadata table for approximately 800k annotated RNA-seq/SRA samples.
- 800k_rnaseq_metappuccino_labels.db: SQLite database containing Metappuccino labels and associated structured metadata.
- manual_dics/: folder containing manual normalization and cross-column remapping dictionaries.
- FINAL_pass_unique_biopsy_site_values_mapped_to_uberon_with_cosine.tsv: maps raw biopsy_site values to normalized UBERON anatomical terms.
- FINAL_pass_unique_organ_values_mapped_to_uberon_with_cosine.tsv: maps raw organ values to normalized UBERON anatomical terms.
- FINAL_pass_unique_disease_values_mapped_to_dot_with_cosine.tsv: maps raw disease values to normalized DOT/DOID disease terms.
- global_all_column_remaps_WITH_ONTOLOGY_MAPPING_VALUE_ONLY.tsv: defines cross-column remapping rules for values found in the wrong metadata field.
- Downloads last month
- 79