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4d0d02d79d7d55d1036861df3feb02af73be6fdb7d297ffe6b07bb0799368f65
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
0
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
1
null
null
null
7
-0.194136325
-2.527374162
-0.102629112
-2.723819938
-0.000608995
-1.026396244
-2.44e-16
-0.246786279
5.434006342
255.818409
null
C[C@H](N[*])C([*])=O |$;;;_R1;;_R2;$|
null
12.65470054
11.85546189
2.855461886
6.348076211
5.598551336
1.151337741
0.562472269
0.562472269
0.208477982
0.208477982
0.022821773
0.022821773
Alanine
null
null
null
31.417637
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
12.37791053
87.06841391
2.666666667
3.5
3.666666667
0.75
null
null
null
-0.37
6
78.05
1
H-Ala-OH
(2S)-2-aminopropanoic acid
643.154604
0.649648837
2.845982721
1.905482094
50.24825279
null
10.70798611
0.311021766
10.70798611
0.136101419
0.650462963
0.136101419
-3.404513889
-0.311021766
-0.2068
24.5857
87.122
null
null
null
Backbone
1
2
null
A
0
0
0
0
0
0
2
1
2
0
4
0
0
0
36
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
13.82771902
8.224551337
7.388651025
null
null
PEPTIDE
5950
H
OH
-
null
null
null
null
null
0
null
17.17244771
6.262212162
0.0
5.309813353
0.0
12.86978459
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
0.0
17.81796057
0.0
1.411842078
0.0
0
null
null
A
29.1
null
61.37189815
0.0
10.70798611
-0.650462963
0.0
0.0
-3.404513889
-1.964236111
-6.64400463
0.0
1.0
null
null
CN[C@@H](C)C=O
[1, 22, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 62, 63, 64, 66, 73, 74, 76, 79, 81, 82, 83, 84, 85, 88, 89, 91, 93, 96, 100, 102, 104, 107, 109, 111, 113, 114, 116, 117, 123, 124, 133, 135, 136, 140, 144, 145, 146, 147, 151, 153, 154, 156, 158, 161, 162, 164, 167, 168, 169, 172, 177, 178, 184, 188, 189, 190...
['1,831', '124', '18', '4', '0', '0']
1,977
[52, 0, 9, 9, 41, 159, 280, 327, 418, 290, 292, 100, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.472173394
C[C@H](N)C(=O)O
aec0c93e6215db5b6194b92e6a63dd8837e80d568ae4dfed3a62920371cfb03d
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
1
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
2
null
null
null
9
-0.194136325
-2.527374162
-0.102629112
-2.723819938
-0.000608995
-1.026396244
-2.44e-16
-0.246786279
5.434006342
255.818409
null
C[C@@H](N[*])C([*])=O |$;;;_R1;;_R2;$|
null
12.65470054
11.85546189
2.855461886
6.348076211
5.598551336
1.151337741
0.562472269
0.562472269
0.208477982
0.208477982
0.022821773
0.022821773
D-alanine
null
null
null
31.417637
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
12.37791053
87.06841391
2.666666667
3.5
3.666666667
0.75
null
null
null
-0.37
6
78.05
2
H-D-Ala-OH
(2R)-2-aminopropanoic acid
643.154604
0.649648837
2.845982721
1.905482094
50.24825279
null
10.70798611
0.311021766
10.70798611
0.136101419
0.650462963
0.136101419
-3.404513889
-0.311021766
-0.2068
24.5857
87.122
null
null
null
Backbone
1
2
null
A
0
0
0
0
0
0
2
1
2
0
4
0
0
0
36
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
13.82771902
8.224551337
7.388651025
null
null
PEPTIDE
71080
H
OH
-
null
null
null
null
null
0
null
17.17244771
6.262212162
0.0
5.309813353
0.0
12.86978459
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
0.0
17.81796057
0.0
1.411842078
0.0
0
null
null
dA
29.1
null
61.37189815
0.0
10.70798611
-0.650462963
0.0
0.0
-3.404513889
-1.964236111
-6.64400463
0.0
1.0
null
null
CN[C@H](C)C=O
[1, 22, 70, 71, 72, 83, 89, 95, 100, 107, 108, 109, 110, 111, 122, 127, 143, 147, 148, 151, 159, 180, 181, 190, 191, 200, 208, 215, 220, 226, 237, 238, 239, 240, 263, 274, 300, 301, 302, 318, 326, 332, 391, 426, 441, 502, 512, 513, 526, 536, 537, 545, 546, 555, 563, 564, 565, 566, 574, 575, 607, 613, 614, 615, 617, 619...
['1,032', '8', '1', '2', '0', '0']
1,043
[54, 0, 6, 14, 25, 54, 128, 206, 272, 191, 68, 22, 3, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.472173394
C[C@@H](N)C(=O)O
2e6e313f19c30a2852a6e48852b8aec7c7809ee4053bf264e6b2c5a316b4ffac
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
2
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
3
null
null
null
5
-0.109570672
-2.600023203
-0.101956799
-2.710671338
-6.09e-16
-1.052850942
-2.09e-16
-0.247120491
6.092382798
311.7959486
null
C[C@H](N(C)[*])C([*])=O |$;;;;_R1;;_R2;$|
null
15.15470054
14.35546189
3.355461886
7.559401077
6.874944538
1.374944538
0.786079067
0.786079067
0.320281381
0.320281381
0.045643546
0.045643546
N-methyl-L-alanine
null
null
null
37.98356028
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
15.07834412
101.084064
2.142857143
2.857142857
3.0
0.8
null
null
null
-0.37
7
90.061
3
Me-Ala-OH
(2S)-2-(methylamino)propanoic acid
1817.930225
0.75988141
2.745638273
2.340479574
59.57505076
null
11.02465278
0.30163827
11.02465278
0.136310736
0.712962963
0.136310736
-3.690972222
-0.30163827
0.1354
29.213
101.149
null
null
null
Backbone
0
2
null
A
0
0
0
0
0
0
2
0
2
0
5
0
0
0
42
null
null
null
null
9.694446915
7.632970719
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
20.80354592
12.33682701
7.388651025
null
null
PEPTIDE
5288725
H
OH
-
null
null
null
null
null
0
null
19.8728813
6.262212162
0.0
4.899909731
0.0
12.86978459
13.9516538
0.0
0
0.0
null
null
null
null
null
null
null
0.0
0.0
0.0
0.0
31.13166816
4.794537184
0.0
21.93023624
0.0
0.0
0.0
0
null
null
meA
20.31
null
76.86543981
0.0
10.31168981
0.0
0.0
0.0
-3.690972222
-2.129861111
-10.68962963
0.0
1.0
null
null
C[C@@H](C=O)N(C)C
[36, 49, 50, 51, 52, 53, 55, 58, 60, 61, 63, 65, 67, 69, 70, 71, 72, 75, 76, 77, 79, 80, 81, 82, 83, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 110, 111, 112, 113, 114, 115, 119, 120, 121, 123, 124, 126, 128, 130, 134, 135, 136, 137, 139, 140, 141, 142, 143, 144, 145, 14...
['1,940', '528', '66', '36', '8', '2']
2,580
[81, 1, 3, 17, 62, 188, 258, 307, 609, 505, 392, 144, 13, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
1
0
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.460873734
CN[C@@H](C)C(=O)O
2e33557d2bb5f74f6224d7f13ea52054d4f5a5e89883e47ce0adfbad0a9ceec3
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
3
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
4
null
null
null
4
-0.109570672
-2.600023203
-0.101956799
-2.710671338
-6.09e-16
-1.052850942
-2.09e-16
-0.247120491
6.092382798
311.7959486
null
C[C@@H](N(C)[*])C([*])=O |$;;;;_R1;;_R2;$|
null
15.15470054
14.35546189
3.355461886
7.559401077
6.874944538
1.374944538
0.786079067
0.786079067
0.320281381
0.320281381
0.045643546
0.045643546
N-methyl-D-alanine
null
null
null
37.98356028
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
15.07834412
101.084064
2.142857143
2.857142857
3.0
0.8
null
null
null
-0.37
7
90.061
4
Me-D-Ala-OH
(2R)-2-(methylamino)propanoic acid
1817.930225
0.75988141
2.745638273
2.340479574
59.57505076
null
11.02465278
0.30163827
11.02465278
0.136310736
0.712962963
0.136310736
-3.690972222
-0.30163827
0.1354
29.213
101.149
null
null
null
Backbone
0
2
null
A
0
0
0
0
0
0
2
0
2
0
5
0
0
0
42
null
null
null
null
9.694446915
7.632970719
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
20.80354592
12.33682701
7.388651025
null
null
PEPTIDE
92973
H
OH
-
null
null
null
null
null
0
null
19.8728813
6.262212162
0.0
4.899909731
0.0
12.86978459
13.9516538
0.0
0
0.0
null
null
null
null
null
null
null
0.0
0.0
0.0
0.0
31.13166816
4.794537184
0.0
21.93023624
0.0
0.0
0.0
0
null
null
Me_dA
20.31
null
76.86543981
0.0
10.31168981
0.0
0.0
0.0
-3.690972222
-2.129861111
-10.68962963
0.0
1.0
null
null
C[C@H](C=O)N(C)C
[67, 69, 80, 81, 92, 99, 105, 106, 117, 131, 132, 136, 139, 153, 155, 168, 171, 173, 175, 176, 177, 194, 195, 218, 224, 225, 234, 235, 253, 254, 255, 271, 281, 294, 311, 312, 324, 330, 338, 339, 349, 350, 351, 352, 354, 358, 359, 364, 365, 366, 367, 370, 374, 382, 392, 410, 411, 420, 427, 428, 429, 430, 442, 443, 444, ...
['1,467', '56', '2', '1', '0', '0']
1,526
[45, 0, 0, 10, 21, 62, 128, 242, 425, 422, 130, 39, 2, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
1
0
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.460873734
CN[C@H](C)C(=O)O
201bab5f4a8ade2b4ea710e5663a0a0b7362614027e6417928983ccaf41da8df
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
4
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
5
null
null
null
1
-0.011399683
-2.739341201
-3.91e-16
-2.77895862
-4.35e-16
-1.142993333
-4.94e-16
-0.247181706
7.513452032
529.4042791
null
CC(C)(C)C[C@H](N[*])C([*])=O |$;;;;;;;_R1;;_R2;$|
null
22.65470054
21.85546189
4.855461886
11.34807621
10.59855134
2.151337741
1.437472269
1.437472269
0.514379681
0.514379681
0.25389069
0.25389069
3-tert-butyl-L-alanine
null
null
null
56.90933661
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
23.34397898
143.1310142
2.1
2.8
3.2
0.875
null
null
null
-0.37
10
126.094
5
H-Ala(tBu)-OH
(2S)-2-amino-4,4-dimethylpentanoic acid
75487.93228
1.091819046
3.71450068
4.503290913
86.94778525
null
11.70449972
0.310776248
11.70449972
0.136406147
1.076087963
0.136406147
-4.558796296
-0.310776248
1.2095
42.9837
143.23
null
null
null
Backbone
1
2
null
A
0
0
0
0
0
0
2
1
2
0
4
0
0
0
60
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
20.55567635
18.76374227
19.19061979
7.388651025
null
null
PEPTIDE
194032
H
OH
-
null
null
null
null
null
0
null
28.13851616
6.262212162
0.0
5.309813353
5.414990469
32.94649372
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
5.414990469
48.86073815
0.0
1.411842078
0.0
0
null
null
Ala(tBu)
29.1
null
126.1725189
0.0
11.70449972
-1.076087963
-4.483125
0.0
-4.337847222
-7.071990741
-16.49130102
0.0
1.0
null
null
CN[C@H](C=O)CC(C)(C)C
[1852, 1853, 1854, 1855, 1856, 1857, 1858, 1859]
['7', '1', '0', '0', '0', '0']
8
[0, 0, 0, 0, 0, 0, 0, 0, 0, 8, 0, 0, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.601567973
CC(C)(C)C[C@H](N)C(=O)O
62770755a9b0cb9e2dba44018d603e04aebeb432569fee60760a119543562768
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
5
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
6
null
null
null
1
-2.65e-17
-2.543022454
-4.96e-17
-2.749961282
1.61e-16
-0.976253499
10.24009953
-0.244083569
3.005832173
959.9067272
null
[*]N[C@@H](Cc1cc2ccccc2[nH]1)C([*])=O |$_R1;;;;;;;;;;;;;;_R2;$|
null
22.85085296
21.30267548
7.302675481
12.93418629
10.74297853
3.848551336
2.496489264
2.496489264
1.579994976
1.579994976
0.986001737
0.986001737
3-indol-2-yl-L-alanine
null
null
null
77.74761625
4.794537184
0.0
4.97700327
0.0
0
0
0
0
0.0
19.27278683
202.1106131
2.0
2.866666667
3.666666667
0.25
null
null
null
-1.61
15
188.145
6
H-Ala(indol-2-yl)-OH
(2S)-2-amino-3-(1H-indol-2-yl)propanoic acid
872335.1593
2.550306658
4.275265955
2.074803633
108.2790811
null
11.81541283
0.358332161
11.81541283
0.166204545
0.06459042
0.166204545
-3.750797194
-0.358332161
1.4973
60.9144
202.257
null
null
null
Backbone
2
3
null
A
0
0
0
1
1
2
2
2
3
0
5
0
0
0
78
null
null
null
null
15.08135381
9.044812797
1.411842078
0.0
0.0
0.0
0.0
0.0
0.0
0.0
18.12725612
24.44688853
24.43734639
14.24244381
null
null
PEPTIDE
10262329
H
OH
-
null
null
null
null
null
2
null
24.06732401
17.16513709
0.0
10.28681662
0.0
12.39081737
6.9758269
35.90602153
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
24.2329348
11.16746209
0.0
22.14303067
30.21209354
2.823684157
10.90292493
0
null
null
Ala(indol-2-yl)
44.89
null
108.1309602
0.0
11.88000325
-1.308645597
-1.804010299
0.0
-7.868361153
-5.762819455
-3.517126926
0.0
1.0
null
null
CN[C@H](C=O)Cc1cc2ccccc2[nH]1
[1067, 1068, 1069, 1070, 1071, 1072, 1073, 1074, 1075, 1093, 1095, 1103]
['10', '1', '1', '0', '0', '0']
12
[5, 0, 0, 0, 0, 0, 2, 2, 2, 1, 0, 0, 0, 0]
0
0
0
0
0
1
1
0
0
0
1
1
0
0
0
0
2
0
0
1
0
1
0
1
0
0
0
0
0
0
0
0
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.73783099
N[C@@H](Cc1cc2ccccc2[nH]1)C(=O)O
bbe25a1665494a7285f831aa96c01ed135488980664d4671e03dde9732629ff3
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
7
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
8
null
null
null
2
-9.44e-17
-2.608259001
-6.64e-17
-2.734628314
6.21e-16
-1.024874978
1.66e-15
-0.244322203
3.078719519
1033.748774
null
CN([*])[C@@H](Cc1cc2ccccc2[nH]1)C([*])=O |$;;_R1;;;;;;;;;;;;;_R2;$|
null
25.35085296
23.80267548
7.802675481
14.14551116
12.01937173
4.072158134
2.720096061
2.720096061
1.691798375
1.691798375
1.03677436
1.03677436
N-methyl-3-indol-2-yl-L-alanine
null
null
null
84.31353953
4.794537184
0.0
4.97700327
0.0
0
0
0
0
0.0
21.97322042
216.1262631
1.8125
2.625
3.375
0.307692308
null
null
null
-1.61
16
200.156
8
Me-Ala(indol-2-yl)-OH
(2S)-3-(1H-indol-2-yl)-2-(methylamino)propanoic acid
2492370.261
2.618420042
4.492640011
2.142568374
117.605879
null
12.1320795
0.358332027
12.1320795
0.166204546
0.014916383
0.166204546
-4.037255527
-0.358332027
1.8395
65.5417
216.284
null
null
null
Backbone
1
3
null
A
0
0
0
1
1
2
2
1
3
0
6
0
0
0
84
null
null
null
null
9.771540454
7.632970719
1.411842078
0.0
0.0
0.0
4.899909731
0.0
0.0
0.0
18.12725612
31.42271543
28.54962206
14.24244381
null
null
PEPTIDE
155188315
H
OH
-
null
null
null
null
null
2
null
26.7677576
17.16513709
0.0
9.876913001
0.0
12.39081737
13.9516538
35.90602153
0
0.0
null
null
null
null
null
null
null
0.0
0.0
0.0
0.0
36.10867143
11.16746209
0.0
26.25530634
30.21209354
1.411842078
10.90292493
0
null
null
Me_Ala(indol-2-yl)
36.1
null
124.5883172
0.0
11.33391671
-0.667618575
-2.011507464
0.0
-8.49186794
-6.144069455
-7.607170519
0.0
1.0
null
null
CN(C)[C@H](C=O)Cc1cc2ccccc2[nH]1
[1104]
['1', '0', '0', '0', '0', '0']
1
[1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
0
0
0
0
0
1
1
0
0
0
1
1
0
0
0
1
1
0
0
1
0
1
0
1
0
0
0
0
0
0
0
0
0
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.791557879
CN[C@@H](Cc1cc2ccccc2[nH]1)C(=O)O
5e38ae16aac2dcdb09b2c1e017ce85f65d8f36867755f81d73bfab64dea45159
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
8
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
9
null
null
null
6
-6.75e-17
-2.529860667
3.24e-17
-2.750417864
0.935916794
-0.976272538
11.1332523
-0.244028765
3.47880043
513.0716988
null
[*]N[C@@H](Cc1nnn[nH]1)C([*])=O |$_R1;;;;;;;;;;_R2;$|
null
15.93072142
14.14431627
5.144316268
8.863931529
6.842978527
2.448551336
1.389964505
1.389964505
0.757568518
0.757568518
0.3769112
0.3769112
3-tetrazol-5-yl-L-alanine
null
null
null
36.76307428
4.794537184
0.0
5.091706558
0.0
0
0
0
0
15.525452
12.41899405
155.0807099
2.454545455
3.363636364
3.909090909
0.6
null
null
null
-1.3
11
146.089
9
H-Ala(tetrazol-5-yl)-OH
(2S)-2-amino-3-(2H-tetrazol-5-yl)propanoic acid
13951.0878
2.099553891
3.768156914
2.080787469
76.1368687
null
11.29540108
0.310419157
11.29540108
0.19342563
0.041257086
0.19342563
-3.480393519
-0.310419157
-1.4709
36.7934
155.161
null
null
null
Backbone
2
6
null
A
0
0
0
0
1
1
5
2
6
0
5
0
0
0
60
null
null
null
null
10.10435054
14.86921729
1.411842078
0.0
0.0
0.0
0.0
5.091706558
0.0
5.098681808
0.0
17.40259709
13.22671768
7.388651025
null
null
PEPTIDE
3246533
H
OH
-
null
null
null
null
null
1
null
17.21353123
6.262212162
0.0
25.92697191
0.0
12.39081737
6.9758269
5.824404498
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
39.87309009
11.16746209
0.0
15.41971439
0.0
2.823684157
0.0
0
null
null
Ala(5-Tet)
83.56
null
65.42480111
0.0
11.29540108
8.435627362
0.0
-0.977222222
-3.480393519
-5.273726852
-3.341153628
0.0
1.0
null
null
CN[C@H](C=O)Cc1nnn[nH]1
[872, 873, 874, 8069]
['4', '0', '0', '0', '0', '0']
4
[0, 0, 0, 0, 0, 1, 0, 0, 1, 0, 2, 0, 0, 0]
0
0
0
0
0
4
1
0
0
0
1
1
0
0
0
3
2
0
0
1
0
1
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0.518433906
N[C@@H](Cc1nnn[nH]1)C(=O)O
65da96287d92c2a795811c27925dd0cecfbeb949dba16929a9059fab57d29b31
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
9
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
10
null
null
null
2
-0.194102403
-2.587555659
-0.102628621
-2.741095952
-0.000608849
-1.080645022
-2.61e-15
-0.248307515
5.936112244
331.3057236
null
CC[C@H](N[*])C([*])=O |$;;;;_R1;;_R2;$|
null
15.15470054
14.35546189
3.355461886
7.598076211
6.848551336
1.401337741
0.687472269
0.687472269
0.326879681
0.326879681
0.076288141
0.076288141
2-aminobutanoic acid
null
null
null
37.7905619
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
15.11942764
101.084064
2.714285714
3.571428571
4.0
0.8
null
null
null
-0.37
7
90.061
10
H-Abu-OH
(2S)-2-aminobutyric acid
2282.945363
0.75988141
3.807619893
2.340479574
59.4231359
null
11.02465278
0.310801928
11.02465278
0.136374213
0.776087963
0.136374213
-3.699421296
-0.310801928
0.1833
29.2027
101.149
null
null
null
Backbone
1
2
null
X
0
0
0
0
0
0
2
1
2
0
5
0
0
0
42
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
6.851892117
13.3487518
10.96606845
7.388651025
null
null
PEPTIDE
80283
H
OH
-
null
null
null
null
null
0
null
19.91396482
6.262212162
0.0
5.309813353
0.0
19.24270949
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
0.0
26.93240258
0.0
1.411842078
0.0
0
null
null
Abu
29.1
null
76.90356481
0.0
11.02465278
-0.776087963
0.0
0.0
-3.690972222
-5.829282407
-6.965208333
0.0
1.0
null
null
CC[C@@H](C=O)NC
[1, 22, 609, 613, 614, 616, 618, 619, 623, 624, 932, 936, 937, 938, 939, 981, 1822, 1862, 1863, 1989, 2080, 2095, 2181, 2188, 2192, 2197, 2336, 2337, 2354, 2355, 2356, 2357, 2360, 7068, 7093, 7102, 7103, 7107, 7111, 7119, 7127, 7129, 7146, 7166, 7179, 7180, 7188, 7353, 7406, 7408, 7413, 7421, 7423, 7428, 7800, 7804, 78...
['132', '2', '0', '0', '0', '0']
134
[2, 1, 1, 4, 10, 9, 24, 15, 37, 23, 4, 4, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.513799937
CC[C@H](N)C(=O)O
654355ce67b671f354dd2d386816d84db2cf7bedf860d16632c2957ef6caa03e
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
10
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
11
null
null
null
2
-0.194102403
-2.587555659
-0.102628621
-2.741095952
-0.000608849
-1.080645022
-2.61e-15
-0.248307515
5.936112244
331.3057236
null
CC[C@@H](N[*])C([*])=O |$;;;;_R1;;_R2;$|
null
15.15470054
14.35546189
3.355461886
7.598076211
6.848551336
1.401337741
0.687472269
0.687472269
0.326879681
0.326879681
0.076288141
0.076288141
D-2-aminobutyric acid
null
null
null
37.7905619
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
15.11942764
101.084064
2.714285714
3.571428571
4.0
0.8
null
null
null
-0.37
7
90.061
11
H-D-Abu-OH
(2R)-2-aminobutanoic acid
2282.945363
0.75988141
3.807619893
2.340479574
59.4231359
null
11.02465278
0.310801928
11.02465278
0.136374213
0.776087963
0.136374213
-3.699421296
-0.310801928
0.1833
29.2027
101.149
null
null
null
Backbone
1
2
null
X
0
0
0
0
0
0
2
1
2
0
5
0
0
0
42
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
6.851892117
13.3487518
10.96606845
7.388651025
null
null
PEPTIDE
439691
H
OH
-
null
null
null
null
null
0
null
19.91396482
6.262212162
0.0
5.309813353
0.0
19.24270949
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
0.0
26.93240258
0.0
1.411842078
0.0
0
null
null
dAbu
29.1
null
76.90356481
0.0
11.02465278
-0.776087963
0.0
0.0
-3.690972222
-5.829282407
-6.965208333
0.0
1.0
null
null
CC[C@H](C=O)NC
[2148, 2232, 2235, 2335, 2336, 2341, 2345, 2349, 7068, 7069, 7081, 7092, 7094, 7095, 7096, 7100, 7104, 7105, 7106, 7107, 7109, 7110, 7111, 7116, 7117, 7122, 7126, 7128, 7130, 7131, 7133, 7137, 7144, 7145, 7153, 7160, 7161, 7166, 8045, 8053, 8149, 8150, 8151, 8152, 8153, 8154, 8155, 8156, 8157, 8158, 8159, 8160, 8161, 8...
['91', '2', '0', '0', '0', '0']
93
[5, 0, 1, 3, 3, 5, 24, 11, 29, 11, 1, 0, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.513799937
CC[C@@H](N)C(=O)O
f990b67f9103b1fe500f385b377bbef213f16cc4e3ce66b19fb28aeb231a8054
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
11
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
12
null
null
null
4
-0.109384187
-2.638001289
-0.101951101
-2.726642808
-6.56e-16
-1.086696699
-6.46e-17
-0.248684519
6.527378435
390.3552226
null
CC[C@H](N(C)[*])C([*])=O |$;;;;;_R1;;_R2;$|
null
17.65470054
16.85546189
3.855461886
8.809401077
8.124944538
1.624944538
0.911079067
0.911079067
0.43868308
0.43868308
0.127060764
0.127060764
N-methyl-L-2-aminobutyric acid
null
null
null
44.35648518
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
17.81986123
115.099714
2.25
3.0
3.375
0.833333333
null
null
null
-0.37
8
102.072
12
Me-Abu-OH
(2S)-2-(methylamino)butanoic acid
6473.716285
0.870384194
3.609784221
2.073105009
68.74993387
null
11.34131944
0.301626729
11.34131944
0.13658371
0.838587963
0.13658371
-3.977430556
-0.301626729
0.5255
33.83
115.176
null
null
null
Backbone
0
2
null
X
0
0
0
0
0
0
2
0
2
0
6
0
0
0
48
null
null
null
null
9.694446915
7.632970719
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
6.851892117
20.3245787
15.07834412
7.388651025
null
null
PEPTIDE
12571757
H
OH
-
null
null
null
null
null
0
null
22.61439841
6.262212162
0.0
4.899909731
0.0
19.24270949
13.9516538
0.0
0
0.0
null
null
null
null
null
null
null
0.0
0.0
0.0
0.0
31.13166816
4.794537184
0.0
31.04467825
0.0
0.0
0.0
0
null
null
Me_Abu
20.31
null
92.72210648
0.0
10.50273148
0.0
0.0
0.0
-3.977430556
-6.210532407
-11.12020833
0.0
1.0
null
null
CC[C@@H](C=O)N(C)C
[1880, 1912, 1915, 1917, 1918, 1923, 2079, 2093, 2176, 2178, 2179, 2181, 2182, 2183, 2184, 2185, 2186, 2187, 2188, 2189, 2190, 2192, 2193, 2194, 2195, 2196, 2197, 2246, 2255, 2256, 2258, 2259, 2260, 2276, 2308, 2310, 2323, 2324, 2354, 8025, 8027, 8028, 8033, 8035, 8036, 8038, 8039, 8040, 8041, 8043, 8044, 8049, 8052, 8...
['53', '14', '0', '0', '0', '0']
67
[0, 1, 0, 1, 1, 3, 12, 3, 30, 12, 3, 1, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
1
0
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.499833309
CC[C@H](NC)C(=O)O
1d28319c9d10ba557117a560fc67594e86b41c1f26c01db4f80fc8b8e82d0263
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
13
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
14
null
null
null
3
-0.109000227
-2.750592309
-0.034232858
-2.86096406
-2.32e-16
-1.073433225
-2.58e-16
-0.244322203
4.099403135
775.1522953
null
CN([*])[C@@H](CCN1CCOCC1)C([*])=O |$;;_R1;;;;;;;;;;;_R2;$|
null
27.93915759
26.71092377
6.710923772
14.38253326
13.20401322
3.204013222
1.888085678
1.888085678
1.023344142
1.023344142
0.48221202
0.48221202
N-methyl-L-4-morpholino-2-aminobutyric acid
null
null
null
75.01305233
4.794537184
0.0
0.0
0.0
0
0
0
0
4.736862954
27.41517112
200.1524779
1.857142857
2.571428571
3.142857143
0.9
null
null
null
-0.45
14
180.122
14
Me-Abu(morpholino)-OH
(2S)-2-(methylamino)-4-morpholin-4-ylbutanoic acid
1812651.965
1.89601469
6.112399029
3.735932971
113.9120436
null
12.10600946
0.37879274
12.10600946
0.136645002
1.013944161
0.136645002
-4.66087963
-0.37879274
-0.1622
55.415
200.282
null
null
null
Backbone
0
4
null
X
0
1
1
0
0
0
4
0
4
0
7
0
1
1
82
null
null
null
null
9.531400138
7.632970719
0.0
0.0
0.0
0.0
9.799819462
0.0
0.0
0.0
0.0
20.3245787
38.68119884
25.98965574
null
null
PEPTIDE
146562373
H
OH
-
null
null
null
null
null
1
null
36.94657126
6.262212162
0.0
9.799819462
0.0
12.39081737
46.56020334
0.0
0
0.0
null
null
null
null
null
null
null
0.0
0.0
0.0
0.0
68.64012743
9.531400138
0.0
33.78809602
0.0
0.0
0.0
0
null
null
Me_Abu(morpholino)
32.78
null
158.0627061
0.0
9.989920792
0.0
0.0
0.0
-4.558638039
-7.3052988
-28.77202334
0.0
1.0
null
null
CN(C)[C@H](C=O)CCN1CCOCC1
[46, 2225, 2226, 2227]
['4', '0', '0', '0', '0', '0']
4
[0, 0, 0, 0, 0, 0, 0, 0, 4, 0, 0, 0, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
2
0
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.577258658
CN[C@@H](CCN1CCOCC1)C(=O)O
9e1264fc2b664d2892b631738a565cf388593c9b69f36590dde2529170e3af7c
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
14
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
15
null
null
null
8
-2.09e-16
-2.382590785
-5.08e-17
-2.426119041
0.172388225
-0.911631779
10.22875349
-0.244005903
3.763074311
538.2467502
null
[*]Nc1ccccc1C([*])=O |$_R1;;;;;;;;;_R2;$|
null
15.11880215
13.85546189
4.855461886
8.496793686
6.848551336
2.401337741
1.437472269
1.437472269
0.88157057
0.88157057
0.463607058
0.463607058
Anthranilic acid
null
null
null
48.65855166
4.794537184
0.0
5.309813353
0.0
0
0
0
0
0.0
12.37791053
135.0684139
1.9
2.7
3.4
0.125
null
null
null
-1.31
10
126.094
15
H-2Abz-OH
2-aminobenzoic acid
7698.954627
1.642164995
3.011779445
1.155696384
72.57546277
null
11.15928382
0.387542194
11.15928382
0.159722212
0.160092593
0.159722212
-3.025373205
-0.387542194
1.5408
41.3762
135.166
null
null
null
Backbone
1
2
null
X
0
0
0
1
0
1
2
1
2
0
3
0
0
0
52
null
null
null
null
5.309813353
1.370758556
7.674054241
0.0
0.0
0.0
4.794537184
0.0
0.0
0.0
12.08483742
12.08483742
22.33894034
5.483034225
null
null
PEPTIDE
227
H
OH
-
null
null
null
null
null
1
null
17.17244771
11.94959844
0.0
0.0
0.0
0.0
12.28564025
29.73312632
0
0.0
null
null
null
null
null
null
null
5.309813353
5.687386275
0.0
0.0
13.23803906
0.0
0.0
21.32405713
24.16967483
1.411842078
0.0
0
null
null
2Abz
29.1
null
65.30243953
0.0
11.15928382
-0.160092593
-1.663773148
0.0
-3.212947373
-1.48287037
-3.025373205
0.0
1.0
null
null
CNc1ccccc1C=O
[962]
['1', '0', '0', '0', '0', '0']
1
[0, 0, 0, 0, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
0
0
0
0
1
0
0
0
0
0
1
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.623043306
Nc1ccccc1C(=O)O
72e82dbb55ad1a857c4cbc471914eb5e7bb0d601ed2de4ba901b6f60b0d35428
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
15
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
16
null
null
null
1
-2.12e-16
-2.610905646
-0.050428408
-2.773100439
-1.45e-16
-1.05405182
-2.55e-16
-0.24696875
6.243809161
309.7959486
null
CC(C)(N[*])C([*])=O |$;;;;_R1;;_R2;$|
null
15.15470054
14.35546189
3.355461886
7.598076211
6.848551336
1.401337741
0.924275668
0.924275668
0.315410717
0.315410717
0.022821773
0.022821773
alpha-methyl-alanine
null
null
null
37.7905619
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
15.11942764
101.084064
2.142857143
2.857142857
3.0
0.8
null
null
null
-0.37
7
90.061
16
H-Aib-OH
2-amino-2-methylpropanoic acid
1917.61139
0.75988141
2.073105009
2.340479574
59.4231359
null
11.18236111
0.308715863
11.18236111
0.138948287
0.796296296
0.138948287
-3.717013889
-0.308715863
0.1833
29.2027
101.149
null
null
null
Backbone
1
2
null
X
0
0
0
0
0
0
2
1
2
0
5
0
0
0
42
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
20.67961113
12.33682701
5.538925252
null
null
PEPTIDE
6119
H
OH
-
null
null
null
null
null
0
null
19.91396482
6.262212162
0.0
5.309813353
0.0
19.24270949
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
18.77696431
4.794537184
0.0
27.4113698
0.0
1.411842078
0.0
0
null
null
Aib
29.1
null
76.98965278
0.0
11.18236111
-0.796296296
-3.717013889
0.0
0.0
-2.172569444
-10.81946759
0.0
1.0
null
null
CNC(C)(C)C=O
[556, 559, 951, 952, 7235, 7263, 7783, 7785, 7787]
['7', '2', '0', '0', '0', '0']
9
[0, 0, 0, 0, 2, 0, 0, 1, 1, 1, 2, 2, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.502719245
CC(C)(N)C(=O)O
94c4314e87ec869f916a2bd84e3a79c0ae5c9b6269a6907a18babfec84bce003
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
16
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
17
null
null
null
7
-0.194101781
-2.696778828
-0.102628552
-2.752032736
-0.000608258
-1.151392243
-2.31e-15
-0.248464588
6.997222828
659.8966817
null
CCCCCC[C@H](N[*])C([*])=O |$;;;;;;;;_R1;;_R2;$|
null
25.15470054
24.35546189
5.355461886
12.59807621
11.84855134
2.401337741
1.187472269
1.187472269
0.576879681
0.576879681
0.229238991
0.229238991
6-ethyl-L-norleucine
null
null
null
63.28226151
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
26.08549609
157.1466642
1.909090909
2.818181818
3.454545455
0.888888889
null
null
null
-0.37
11
138.105
17
H-Aoc(2)-OH
(2S)-2-aminooctanoic acid
321362.6544
1.202660764
7.73384216
6.04536864
96.12266836
null
11.66051316
0.310793281
11.66051316
0.136384966
1.072206515
0.136384966
-4.522708333
-0.310793281
1.7437
47.6707
157.257
null
null
null
Backbone
1
2
null
L
0
0
0
0
0
0
2
1
2
0
9
0
0
0
66
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
32.34359172
13.3487518
21.9321369
7.388651025
null
null
PEPTIDE
1549365
H
OH
-
null
null
null
null
null
0
null
30.88003327
6.262212162
0.0
5.309813353
0.0
44.73440909
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
0.0
63.39017064
0.0
1.411842078
0.0
0
null
null
Aoc(2)
29.1
null
141.5075093
0.0
11.66051316
-1.072206515
0.0
0.0
-4.29377303
-24.46573724
-7.669639038
0.0
1.0
null
null
CCCCCC[C@@H](C=O)NC
[613, 614, 615, 616, 739, 740, 787, 7804, 7805, 7806, 7807]
['11', '0', '0', '0', '0', '0']
11
[0, 0, 0, 0, 0, 0, 1, 3, 0, 0, 3, 4, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.450320217
CCCCCC[C@H](N)C(=O)O
eaf6efdd1e1b3260ca5ad11f3cacb6eda886aa9f10cc694f886b5d3dbf97d8c6
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
17
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
18
null
null
null
9
-0.197065285
-2.629592431
-0.10280098
-2.71174799
-0.000608701
-1.077918201
-1.01e-15
-0.24407975
6.025374482
411.3747726
null
[*]NCCCCC([*])=O |$_R1;;;;;;;_R2;$|
null
17.65470054
16.85546189
3.855461886
8.848076211
8.098551336
1.651337741
0.70066887
0.70066887
0.287834435
0.287834435
0.112667218
0.112667218
5-aminovaleric acid
null
null
null
44.1634868
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
17.86094475
115.099714
2.125
3.0
3.625
0.833333333
null
null
null
-0.37
8
102.072
18
H-5-Ava-OH
5-aminopentanoic acid
8269.03244
0.870384194
6.63
5.63
68.59801902
null
10.84349407
0.319751917
10.84349407
0.121866179
0.817131047
0.121866179
-3.934166667
-0.319751917
0.575
33.8417
115.176
null
null
null
Backbone
1
2
null
X
0
0
0
0
0
0
2
1
2
0
6
0
0
0
48
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
26.21853639
21.45126902
0.0
null
null
PEPTIDE
138
H
OH
-
null
null
null
null
null
0
null
22.65548194
6.262212162
0.0
5.309813353
0.0
19.1187747
13.47268658
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.73489875
4.794537184
0.0
35.56787738
0.0
1.411842078
0.0
0
null
null
5-Ava
29.1
null
92.89467604
0.0
10.84349407
-0.817131047
0.0
0.0
0.0
-13.73568972
-7.268682681
0.0
1.0
null
null
CNCCCCC=O
[5600, 5601, 5602, 5603, 5604, 5605]
['6', '0', '0', '0', '0', '0']
6
[0, 0, 0, 0, 0, 3, 1, 2, 0, 0, 0, 0, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.419107049
NCCCCC(=O)O
866619a44416544bddf645aea3c420b3b842cf34097fc51ea430109a49c190f0
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
18
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
19
null
null
null
6
-0.197012946
-2.526384497
-0.102800997
-2.697558742
-0.000608994
-1.011696074
-3.48e-17
-0.244011038
5.229314237
257.328184
null
[*]NCCC([*])=O |$_R1;;;;;_R2;$|
null
12.65470054
11.85546189
2.855461886
6.348076211
5.598551336
1.151337741
0.45066887
0.45066887
0.162834435
0.162834435
0.050772623
0.050772623
beta-alanine
null
null
null
31.417637
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
12.37791053
87.06841391
2.666666667
3.5
4.0
0.75
null
null
null
-0.37
6
78.05
19
H-bAla-OH
3-aminopropanoic acid
674.1217344
0.649648837
4.63
3.63
50.24825279
null
10.5015462
0.319323718
10.5015462
0.121880959
0.6325
0.121880959
-3.405671296
-0.319323718
-0.2052
24.6077
87.122
null
null
null
Backbone
1
2
null
A
0
0
0
0
0
0
2
1
2
0
4
0
0
0
36
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
6.9758269
22.46509448
0.0
null
null
PEPTIDE
239
H
OH
-
null
null
null
null
null
0
null
17.17244771
6.262212162
0.0
5.309813353
0.0
6.372924901
13.47268658
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.73489875
4.794537184
0.0
17.33899335
0.0
1.411842078
0.0
0
null
null
Bal
29.1
null
61.47725009
0.0
10.5015462
-0.6325
0.0
0.0
0.0
-5.307986111
-6.621643519
0.0
1.0
null
null
CNCCC=O
[940, 941, 942, 943, 944, 945, 7891, 8031, 8032, 8033, 8034, 8035]
['12', '0', '0', '0', '0', '0']
12
[0, 0, 0, 0, 0, 2, 2, 2, 5, 1, 0, 0, 0, 0]
0
0
0
0
0
0
0
0
0
0
1
1
0
0
0
0
1
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0.381110804
NCCC(=O)O
55e10f7998dcd1c868cc366c0b5253994be3c7adaa80bbfc7eba10b8280c64c8
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
21
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
22
null
null
null
4
-1.64e-16
-2.556045165
-7.64e-17
-2.814013324
1.83e-34
-0.97013053
0.0
-0.244092013
6.152204191
480.6615939
null
[*]N[C@@H](CSCC([*])=O)C(N)=O |$_R1;;;;;;;_R2;;;;$|
null
19.01650786
17.11917206
5.935668643
9.909242268
8.078957761
3.053813555
1.173811051
1.786183487
0.554783003
1.035589647
0.208984796
0.531310841
N.D
null
null
null
59.36444031
9.589074368
0.0
0.0
0.0
0
0
0
0
0.0
16.57235324
176.0619486
2.454545455
3.272727273
3.818181818
0.666666667
null
null
null
-0.55
11
164.145
22
H-Cys(EtO2H)-NH2
2-[(2R)-2,3-diamino-3-oxopropyl]sulfanylacetic acid
22512.95036
2.028267886
6.178921041
4.802991003
86.9336846
null
11.79943452
0.368291596
11.79943452
0.234904724
0.674305556
0.234904724
-3.768634259
-0.368291596
-1.0082
45.4311
176.241
null
null
null
Backbone
3
4
null
C
0
0
0
0
0
0
4
2
5
0
7
0
0
0
64
null
null
null
null
15.82406751
9.044812797
2.823684157
5.907179729
0.0
0.0
4.794537184
0.0
11.76188495
0.0
0.0
6.9758269
21.00522366
7.388651025
null
null
PEPTIDE
21969402
H
OH
-
null
null
null
null
null
0
null
26.16142761
23.93127684
0.0
5.309813353
5.719716976
6.017892468
18.38574067
0.0
0
0.0
null
null
null
null
null
null
null
11.02953033
0.0
0.0
11.76188495
36.57302503
9.589074368
0.0
12.33682701
0.0
4.235526235
0.0
0
null
null
Cys(EtO2H)_NH2
72.19
null
85.97956534
-0.674305556
22.64200519
-0.79571901
-7.668553949
-2.102449452
-3.768634259
-1.916489512
-3.528752126
0.0
1.0
null
null
CN[C@@H](CSCC=O)C(N)=O
[7448, 7449, 7450, 7451]
['4', '0', '0', '0', '0', '0']
4
[1, 0, 0, 0, 0, 0, 2, 1, 0, 0, 0, 0, 0, 0]
0
0
0
0
0
0
0
0
0
0
2
2
0
0
0
0
1
1
0
1
0
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
0
1
0
0
0
1
0
0
0
0
0
0
0
0
0
0.401686064
NC(=O)[C@@H](N)CSCC(=O)O
e8ff16906c7d521589729fe6a847e26047c9f750aff598a14d9bd5c250dcacfd
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
22
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
23
null
null
null
9
-0.194100788
-2.824301558
-0.102628418
-2.79027607
-0.000607991
-1.174533516
-2.95e-15
-0.244198539
4.217180492
723.2776773
null
[*]N[C@@H](CC1CCCCC1)C([*])=O |$_R1;;;;;;;;;;;_R2;$|
null
25.65470054
24.85546189
5.855461886
13.09807621
12.34855134
2.901337741
1.687472269
1.687472269
0.951879681
0.951879681
0.507189841
0.507189841
3-cyclohexyl-L-alanine
null
null
null
68.69725198
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
26.08549609
169.1466642
2.083333333
2.833333333
3.416666667
0.9
null
null
null
-0.37
12
150.116
23
H-Cha-OH
(2S)-2-amino-3-cyclohexylpropanoic acid
674488.2706
1.400722969
5.306328435
2.935823365
101.4817793
null
11.89517176
0.310784572
11.89517176
0.136395797
1.091096466
0.136395797
-4.611921296
-0.310784572
1.7437
50.1037
169.268
null
null
null
Backbone
1
2
null
A
1
0
1
0
0
0
2
1
2
0
5
1
0
1
70
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
31.86462451
19.24270949
21.9321369
7.388651025
null
null
PEPTIDE
712421
H
OH
-
null
null
null
null
null
1
null
30.88003327
6.262212162
0.0
5.309813353
5.893957685
44.25544188
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
5.893957685
62.91120342
0.0
1.411842078
0.0
0
null
null
Cha
29.1
null
147.2204486
0.0
11.89517176
-1.091096466
0.0
-4.574791667
-4.391950113
-28.29677544
-3.844340042
0.0
1.0
null
null
CN[C@H](C=O)CC1CCCCC1
[1857, 2317, 2319, 2320, 2321, 2331, 2332, 2333, 2339, 2340, 2341, 2342, 2343, 2347, 2348, 2349, 2350, 2351, 7413, 7416, 7418, 7419, 7420, 8121, 8122, 8123, 8124, 8133, 8134, 8135, 8136, 8145, 8146, 8147, 8148, 8368, 8391, 8392, 8393, 8394, 8395, 8396, 8397, 8398, 8399, 8400, 8401, 8402, 8403, 8404, 8405, 8406, 8413, 8...
['47', '27', '0', '0', '0', '0']
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N[C@@H](CC1CCCCC1)C(=O)O
8bc4519abda2c866d87116809ba641a57afcdcd66f5487353c05819612016652
cycpeptmpdb
peptide/cycpeptmpdb/CycPeptMPDB_Monomer_All.csv
tables/peptide_cycpeptmpdb_CycPeptMPDB_Monomer_All.csv.jsonl
23
all
CycPeptMPDB
CycPeptMPDB_Monomer_All
monomer
CycPeptMPDB_Monomer_All
null
null
24
null
null
null
4
-0.194100788
-2.824301558
-0.102628418
-2.79027607
-0.000607991
-1.174533516
-2.95e-15
-0.244198539
4.217180492
723.2776773
null
[*]N[C@H](CC1CCCCC1)C([*])=O |$_R1;;;;;;;;;;;_R2;$|
null
25.65470054
24.85546189
5.855461886
13.09807621
12.34855134
2.901337741
1.687472269
1.687472269
0.951879681
0.951879681
0.507189841
0.507189841
3-cyclohexyl-D-alanine
null
null
null
68.69725198
4.794537184
0.0
0.0
0.0
0
0
0
0
0.0
26.08549609
169.1466642
2.083333333
2.833333333
3.416666667
0.9
null
null
null
-0.37
12
150.116
24
H-D-Cha-OH
(2R)-2-amino-3-cyclohexylpropanoic acid
674488.2706
1.400722969
5.306328435
2.935823365
101.4817793
null
11.89517176
0.310784572
11.89517176
0.136395797
1.091096466
0.136395797
-4.611921296
-0.310784572
1.7437
50.1037
169.268
null
null
null
Backbone
1
2
null
A
1
0
1
0
0
0
2
1
2
0
5
1
0
1
70
null
null
null
null
10.10435054
9.044812797
0.0
0.0
0.0
0.0
0.0
0.0
0.0
0.0
31.86462451
19.24270949
21.9321369
7.388651025
null
null
PEPTIDE
736026
H
OH
-
null
null
null
null
null
1
null
30.88003327
6.262212162
0.0
5.309813353
5.893957685
44.25544188
6.9758269
0.0
0
0.0
null
null
null
null
null
null
null
5.309813353
0.0
0.0
0.0
19.25593153
4.794537184
5.893957685
62.91120342
0.0
1.411842078
0.0
0
null
null
dCha
29.1
null
147.2204486
0.0
11.89517176
-1.091096466
0.0
-4.574791667
-4.391950113
-28.29677544
-3.844340042
0.0
1.0
null
null
CN[C@@H](C=O)CC1CCCCC1
[7076, 7077, 7082, 7083, 7102, 7103, 7104, 7116, 7117, 7125, 7127, 7128, 7129, 7130, 7131, 7137, 7141, 7142, 7146, 7153, 7154, 7156, 7158, 7159, 7164, 7165, 7166, 7169, 7174, 7175, 7178, 7180, 7182, 7183, 7185, 7186, 7428, 7431, 7433, 7434, 7435, 7440, 7441, 7442, 7443, 7444, 7445, 7446, 7447, 7448, 7449, 7450, 7451]
['52', '1', '0', '0', '0', '0']
53
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N[C@H](CC1CCCCC1)C(=O)O
End of preview. Expand in Data Studio

LiteFold/CycPepMPDB

This repository now includes a Dataset Viewer-friendly Parquet version of the LiteFold CycPepMPDB tables. The default load_dataset() configuration reads the normalized Parquet files in data/.

The normalized default table contains 8,851 rows from the CycPeptMPDB_Peptide_All.csv and CycPeptMPDB_Monomer_All.csv source tables. These all-record tables are used as the default view to avoid duplicating rows from overlapping subset tables. The original wrapped JSONL source tables remain available in the repository under tables/.

Splits

  • train: 7,983 rows
  • test: 868 rows

Rows are assigned with a deterministic hash split: sha256(record_id) % 10, where bucket 0 is test and buckets 1-9 are train.

Columns

The table includes common browsing and modeling columns:

  • record_id: stable SHA-256 row identifier
  • dataset_id, source_file, source_table, source_row_index: source provenance
  • entity_type: peptide or monomer
  • assay_name, sequence, sequence_length, target, score_value, label: normalized convenience fields when present
  • split_bucket: deterministic split bucket

Original descriptor and assay fields are preserved as snake_case string columns, including fields such as smiles, permeability, caco2, pampa, mdck, rrck, and molecular descriptor columns. See metadata/column_mapping.parquet for the original field-name mapping and metadata/source_tables.parquet for per-table row counts.

Usage

from datasets import load_dataset

ds = load_dataset("LiteFold/CycPepMPDB")
print(ds)
print(ds["train"][0])

Load selected columns:

from datasets import load_dataset

cols = ["record_id", "entity_type", "sequence", "smiles", "permeability", "score_value"]
train = load_dataset("LiteFold/CycPepMPDB", split="train", columns=cols)

Filter to peptides:

from datasets import load_dataset

train = load_dataset("LiteFold/CycPepMPDB", split="train")
peptides = train.filter(lambda row: row["entity_type"] == "peptide")

Metadata tables can be loaded directly:

from datasets import load_dataset

source_tables = load_dataset(
    "parquet",
    data_files="hf://datasets/LiteFold/CycPepMPDB/metadata/source_tables.parquet",
    split="train",
)
column_mapping = load_dataset(
    "parquet",
    data_files="hf://datasets/LiteFold/CycPepMPDB/metadata/column_mapping.parquet",
    split="train",
)

Rebuild

The normalization script used for this upload is included at scripts/prepare_wrapped_jsonl_dataset.py.

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