environment.yml

name: infer
channels:
  - main
  - r
  - conda-forge
  - bioconda
  - pytorch
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - aiohappyeyeballs=2.4.4=py39h06a4308_0
  - aiohttp=3.11.10=py39h5eee18b_0
  - aiosignal=1.2.0=pyhd3eb1b0_0
  - aom=3.6.0=h6a678d5_0
  - async-timeout=5.0.1=py39h06a4308_0
  - attrs=24.3.0=py39h06a4308_0
  - blas=1.0=openblas
  - blosc=1.21.3=h6a678d5_0
  - bottleneck=1.4.2=py39ha9d4c09_0
  - brotli=1.0.9=h5eee18b_9
  - brotli-bin=1.0.9=h5eee18b_9
  - brotli-python=1.0.9=py39h6a678d5_9
  - brunsli=0.1=h2531618_0
  - bzip2=1.0.8=h5eee18b_6
  - c-ares=1.19.1=h5eee18b_0
  - ca-certificates=2025.2.25=h06a4308_0
  - certifi=2025.4.26=py39h06a4308_0
  - cffi=1.17.1=py39h1fdaa30_1
  - cfitsio=3.470=h5893167_7
  - charls=2.2.0=h2531618_0
  - dav1d=1.2.1=h5eee18b_0
  - freetype=2.13.3=h4a9f257_0
  - frozenlist=1.5.0=py39h5eee18b_0
  - fsspec=2025.3.2=py39he3bba80_0
  - gettext=0.21.0=hedfda30_2
  - giflib=5.2.2=h5eee18b_0
  - icu=73.1=h6a678d5_0
  - imagecodecs=2024.9.22=py39h652d938_1
  - imageio=2.37.0=py39h06a4308_0
  - importlib_resources=6.4.0=py39h06a4308_0
  - joblib=1.4.2=py39h06a4308_0
  - jpeg=9e=h5eee18b_3
  - jxrlib=1.1=h7b6447c_2
  - krb5=1.20.1=h143b758_1
  - lazy_loader=0.4=py39h06a4308_0
  - lcms2=2.16=h92b89f2_1
  - ld_impl_linux-64=2.40=h12ee557_0
  - lerc=4.0.0=h6a678d5_0
  - libaec=1.1.3=h6a678d5_0
  - libavif=1.1.1=h5eee18b_0
  - libbrotlicommon=1.0.9=h5eee18b_9
  - libbrotlidec=1.0.9=h5eee18b_9
  - libbrotlienc=1.0.9=h5eee18b_9
  - libcurl=8.12.1=hc9e6f67_0
  - libdeflate=1.22=h5eee18b_0
  - libedit=3.1.20230828=h5eee18b_0
  - libev=4.33=h7f8727e_1
  - libffi=3.4.4=h6a678d5_1
  - libflac=1.3.4=h27087fc_0
  - libgcc-ng=11.2.0=h1234567_1
  - libgfortran-ng=11.2.0=h00389a5_1
  - libgfortran5=11.2.0=h1234567_1
  - libgomp=11.2.0=h1234567_1
  - libnghttp2=1.57.0=h2d74bed_0
  - libogg=1.3.5=h27cfd23_1
  - libopenblas=0.3.29=ha39b09d_0
  - libopus=1.3.1=h5eee18b_1
  - libpng=1.6.39=h5eee18b_0
  - libsndfile=1.0.31=h9c3ff4c_1
  - libssh2=1.11.1=h251f7ec_0
  - libstdcxx-ng=11.2.0=h1234567_1
  - libtiff=4.7.0=hde9077f_0
  - libvorbis=1.3.7=h7b6447c_0
  - libwebp-base=1.3.2=h5eee18b_1
  - libxml2=2.13.8=hfdd30dd_0
  - libzopfli=1.0.3=he6710b0_0
  - lz4-c=1.9.4=h6a678d5_1
  - matplotlib-base=3.9.2=py39hbfdbfaf_1
  - multidict=6.1.0=py39h5eee18b_0
  - ncurses=6.4=h6a678d5_0
  - networkx=3.2.1=py39h06a4308_0
  - numexpr=2.10.1=py39hd28fd6d_0
  - numpy=1.26.4=py39heeff2f4_0
  - numpy-base=1.26.4=py39h8a23956_0
  - openjpeg=2.5.2=h0d4d230_1
  - openssl=3.0.16=h5eee18b_0
  - pandas=2.2.3=py39h6a678d5_0
  - pip=25.1=pyhc872135_2
  - propcache=0.3.1=py39h5eee18b_0
  - pybind11-abi=4=hd3eb1b0_1
  - pycparser=2.21=pyhd3eb1b0_0
  - pysocks=1.7.1=py39h06a4308_0
  - pysoundfile=0.11.0=pyhd8ed1ab_0
  - python=3.9.21=he870216_1
  - python-dateutil=2.9.0post0=py39h06a4308_2
  - python-tzdata=2025.2=pyhd3eb1b0_0
  - readline=8.2=h5eee18b_0
  - requests=2.32.3=py39h06a4308_1
  - scikit-image=0.24.0=py39h1128e8f_0
  - scikit-learn=1.6.1=py39h6a678d5_0
  - scipy=1.13.1=py39heeff2f4_1
  - setuptools=78.1.1=py39h06a4308_0
  - six=1.17.0=py39h06a4308_0
  - snappy=1.2.1=h6a678d5_0
  - sqlite=3.45.3=h5eee18b_0
  - threadpoolctl=3.5.0=py39h2f386ee_0
  - tifffile=2023.4.12=py39h06a4308_0
  - tk=8.6.14=h39e8969_0
  - typing_extensions=4.12.2=py39h06a4308_0
  - tzdata=2025b=h04d1e81_0
  - unicodedata2=15.1.0=py39h5eee18b_1
  - wfdb=4.3.0=pyhd8ed1ab_0
  - wheel=0.45.1=py39h06a4308_0
  - xz=5.6.4=h5eee18b_1
  - yarl=1.18.0=py39h5eee18b_0
  - zfp=1.0.0=h6a678d5_0
  - zipp=3.21.0=py39h06a4308_0
  - zlib=1.2.13=h5eee18b_1
  - zlib-ng=2.0.7=h5eee18b_0
  - zstd=1.5.6=hc292b87_0
  - pip:
      - asttokens==3.0.0
      - charset-normalizer==3.4.2
      - comm==0.2.2
      - contourpy==1.3.0
      - cycler==0.12.1
      - debugpy==1.8.14
      - decorator==5.2.1
      - exceptiongroup==1.3.0
      - executing==2.2.0
      - filelock==3.18.0
      - fonttools==4.58.0
      - idna==3.10
      - importlib-metadata==8.7.0
      - importlib-resources==6.5.2
      - ipykernel==6.29.5
      - ipython==8.18.1
      - jedi==0.19.2
      - jinja2==3.1.6
      - jupyter-client==8.6.3
      - jupyter-core==5.7.2
      - kiwisolver==1.4.7
      - markupsafe==3.0.2
      - matplotlib==3.9.4
      - matplotlib-inline==0.1.7
      - mpmath==1.3.0
      - nest-asyncio==1.6.0
      - nvidia-cublas-cu12==12.6.4.1
      - nvidia-cuda-cupti-cu12==12.6.80
      - nvidia-cuda-nvrtc-cu12==12.6.77
      - nvidia-cuda-runtime-cu12==12.6.77
      - nvidia-cudnn-cu12==9.5.1.17
      - nvidia-cufft-cu12==11.3.0.4
      - nvidia-cufile-cu12==1.11.1.6
      - nvidia-curand-cu12==10.3.7.77
      - nvidia-cusolver-cu12==11.7.1.2
      - nvidia-cusparse-cu12==12.5.4.2
      - nvidia-cusparselt-cu12==0.6.3
      - nvidia-nccl-cu12==2.26.2
      - nvidia-nvjitlink-cu12==12.6.85
      - nvidia-nvtx-cu12==12.6.77
      - opencv-python==4.11.0.86
      - packaging==25.0
      - parso==0.8.4
      - patched-yolo-infer==1.3.8
      - pexpect==4.9.0
      - pillow==11.2.1
      - platformdirs==4.3.8
      - prompt-toolkit==3.0.51
      - psutil==7.0.0
      - ptyprocess==0.7.0
      - pure-eval==0.2.3
      - py-cpuinfo==9.0.0
      - pygments==2.19.1
      - pyparsing==3.2.3
      - pytz==2025.2
      - pyyaml==6.0.2
      - pyzmq==26.4.0
      - seaborn==0.13.2
      - simpleitk==2.5.0
      - stack-data==0.6.3
      - sympy==1.14.0
      - torch==2.7.0
      - torchvision==0.22.0
      - tornado==6.4.2
      - tqdm==4.67.1
      - traitlets==5.14.3
      - triton==3.3.0
      - typing-extensions==4.13.2
      - ultralytics==8.3.133
      - ultralytics-thop==2.0.14
      - urllib3==2.4.0
      - wcwidth==0.2.13
prefix: /cluster/apps/scaimed/cachtari/conda/envs/infer