train_drugs list | ood_drugs list | seed int64 | n_train int64 | n_ood int64 | stratum_counts dict | swap_note string |
|---|---|---|---|---|---|---|
[
"2-Methoxyestradiol",
"A-366",
"ABT-737",
"AG-490",
"AMG-900",
"AR-42",
"AT9283",
"AZ",
"AZD1480",
"Abexinostat",
"Alisertib",
"Altretamine",
"Alvespimycin",
"Aminoglutethimide",
"Anacardic",
"Andarine",
"Aurora",
"Avagacestat",
"BMS-265246",
"BMS-536924",
"BMS-911543",
"BR... | [
"AC480",
"AG-14361",
"AICAR",
"Alendronate",
"Amisulpride",
"Azacitidine",
"BMS-754807",
"Belinostat",
"CUDC-101",
"Cimetidine",
"Daphnetin",
"GSK-LSD1",
"INO-1001",
"JNJ-26854165",
"JNJ-7706621",
"MLN8054",
"Momelotinib",
"NVP-BSK805",
"Nintedanib",
"PHA-680632",
"Raltitrexe... | 1 | 161 | 25 | {
"PKC signaling": {
"eligible": 3,
"ood": 1
},
"Epigenetic regulation": {
"eligible": 46,
"ood": 5
},
"Cell cycle regulation": {
"eligible": 21,
"ood": 3
},
"Other": {
"eligible": 6,
"ood": 1
},
"Tyrosine kinase signaling": {
"eligible": 29,
"ood": 3
},
"JA... | v2b: swapped Belinostat (TRAIN->OOD) with SRT1720 (OOD->TRAIN). Both Epigenetic regulation stratum; iter169 plan named SRT2104 but that drug is in TRAIN under v2. Motivation: restore belinostat OOD to match the wet-lab narrative (MCF7 qPCR + microscopy). |
YAML Metadata Warning:empty or missing yaml metadata in repo card
Check out the documentation for more information.
scFATE — NeurIPS 2026 datasets
Paper-canonical splits and biological-descriptor multiview tensors for the four perturbation benchmarks evaluated in
Angione-Lab/scFATE.
Files
| Path | Source | Use |
|---|---|---|
CRISPRa-norman/norman2019_gears_split.h5ad |
Norman et al. 2019, GEARS split | CRISPRa (Norman) |
replogle_k562/replogle_k562.h5ad |
Replogle et al. 2022 | K562 CRISPRi |
replogle_rpe1/replogle_rpe1.h5ad |
Replogle et al. 2022 | RPE1 CRISPRi |
sciplex3/sciplex3.h5ad |
Srivatsan et al. 2020 | SciPlex3 chemical |
gene_embeddings/{norman,replogle_k562,replogle_rpe1}_multiview.pt |
precomputed | gene-descriptor multiview |
drug_embeddings/sciplex3_multiview_v2.pt |
precomputed (Morgan + RDKit + ChemBERTa) | drug-descriptor multiview |
splits/sciplex3_split_v2b.json |
mechanism-of-action stratified | SciPlex3 25-drug OOD split |
Usage
from huggingface_hub import snapshot_download
data_dir = snapshot_download("Angione-Lab/scFATE-datasets", repo_type="dataset")
# Then in scFATE training code, point --dataset_h5ad at e.g.
# {data_dir}/replogle_k562/replogle_k562.h5ad
- Downloads last month
- -